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si:dkey-87o1.2 si:dkey-87o1.2 [ Danio rerio (zebrafish) ]

Gene ID: 796684, updated on 12-Sep-2024

Summary

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Official Symbol
si:dkey-87o1.2provided by ZNC
Official Full Name
si:dkey-87o1.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-110411-217
See related
Ensembl:ENSDARG00000095796 AllianceGenome:ZFIN:ZDB-GENE-110411-217
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkey-87o1.2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (17713480..17719700)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (17807950..17812996)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene si:dkey-17m8.1 Neighboring gene transmembrane protein 238b Neighboring gene uncharacterized LOC137487838 Neighboring gene zgc:174935 Neighboring gene microRNA 190b Neighboring gene thioesterase superfamily member 4 Neighboring gene RAR-related orphan receptor C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. Cheung CT, et al. BMC Genomics, 2019 Jul 15. PMID 31307377, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC796684

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326612.1 → NP_001313541.1  uncharacterized protein LOC796684 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). This encoded isoform (1) lacks a predicted signal peptide compared to isoform 2.
    Source sequence(s)
    CR361564, EH475885, EH538422
    UniProtKB/TrEMBL
    A0A8M1P854, F8W378
    Related
    ENSDARP00000124470.1, ENSDART00000149042.3
    Conserved Domains (1) summary
    cl01868
    Location:66 → 144
    YukC; WXG100 protein secretion system (Wss), protein YukC

  2. NM_001326613.1 → NP_001313542.1  uncharacterized protein LOC796684 isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start site compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    CR361564, EH475885, EH539705
    UniProtKB/TrEMBL
    A0A8M1P3J3, F8W4X3
    Related
    ENSDARP00000123855.1, ENSDART00000149437.3
    Conserved Domains (1) summary
    cl01868
    Location:41 → 119
    YukC; WXG100 protein secretion system (Wss), protein YukC

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    17713480..17719700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214027.1 → XP_068070128.1  uncharacterized protein LOC796684 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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