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tcerg1b transcription elongation regulator 1b (CA150) [ Danio rerio (zebrafish) ]

Gene ID: 797473, updated on 17-Sep-2024

Summary

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Official Symbol
tcerg1bprovided by ZNC
Official Full Name
transcription elongation regulator 1b (CA150)provided by ZNC
Primary source
ZFIN:ZDB-GENE-101026-4
See related
Ensembl:ENSDARG00000030665 AllianceGenome:ZFIN:ZDB-GENE-101026-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tcerg1
Summary
Orthologous to human TCERG1 (transcription elongation regulator 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See tcerg1b in Genome Data Viewer
Location:
chromosome: 21
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (41781354..41818205, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (41768142..41805040, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene microRNA 146b-1 Neighboring gene protein phosphatase 2, regulatory subunit B, beta b Neighboring gene chaperonin containing TCP1, subunit 6A (zeta 1) Neighboring gene ring finger protein 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA polymerase binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription elongation regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    41781354..41818205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009295682.4 → XP_009293957.1  transcription elongation regulator 1

    UniProtKB/TrEMBL
    A0A8M3AU80
    Related
    ENSDARP00000046075.8, ENSDART00000046076.9
    Conserved Domains (5) summary
    smart00441
    Location:847 → 902
    FF; Contains two conserved F residues
    smart00456
    Location:126 → 158
    WW; Domain with 2 conserved Trp (W) residues
    cd00201
    Location:345 → 372
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam01846
    Location:621 → 668
    FF; FF domain
    pfam05537
    Location:708 → 801
    DUF759; Borrelia burgdorferi protein of unknown function (DUF759)
Nucleotide Protein Strain
Heading Accession and Version

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