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LOC797799 PDZ serine protease domain-containing protein [ Danio rerio (zebrafish) ]

Gene ID: 797799, updated on 17-Sep-2024

Summary

Gene symbol
LOC797799
Gene description
PDZ serine protease domain-containing protein
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

See LOC797799 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (9261815..9284407, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (8929790..8952384, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene serine protease HTRA2, mitochondrial-like Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 157 Neighboring gene degP_htrA_DO protease family protein Neighboring gene mitochondrial ribosomal protein S26

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC797799

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110528.2NP_001103998.1  uncharacterized protein LOC797799

    See identical proteins and their annotated locations for NP_001103998.1

    Status: PREDICTED

    Source sequence(s)
    BC152072
    UniProtKB/TrEMBL
    A7MC76
    Conserved Domains (2) summary
    cd00987
    Location:168252
    PDZ_serine_protease; PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind ...
    pfam13365
    Location:1127
    Trypsin_2; Trypsin-like peptidase domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    9261815..9284407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394865.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    425824..448416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)