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ssbp2b single stranded DNA binding protein 2b [ Danio rerio (zebrafish) ]

Gene ID: 798086, updated on 17-Sep-2024

Summary

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Official Symbol
ssbp2bprovided by ZNC
Official Full Name
single stranded DNA binding protein 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-197
See related
Ensembl:ENSDARG00000099727 AllianceGenome:ZFIN:ZDB-GENE-090312-197
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ssbp2; si:ch211-219m24.4
Summary
Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See ssbp2b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (42930896..43028926, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (43101903..43200598, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene zinc finger, CCHC domain containing 9 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene ATG10 autophagy related 10 homolog (S. cerevisiae) Neighboring gene transmembrane protein 167A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
single-stranded DNA-binding protein 2
Names
single-stranded DNA binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    42930896..43028926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305684.4 → XP_009303959.1  single-stranded DNA-binding protein 2

    UniProtKB/TrEMBL
    A0A0R4IQW8, A0A8M3AXA4
    Related
    ENSDARP00000136811.1, ENSDART00000171494.2
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 327
    SSDP; Single-stranded DNA binding protein, SSDP
Nucleotide Protein
Heading Accession and Version

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Research Materials