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si:ch73-359m17.2 si:ch73-359m17.2 [ Danio rerio (zebrafish) ]

Gene ID: 799904, updated on 18-Sep-2024

Summary

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Official Symbol
si:ch73-359m17.2provided by ZNC
Official Full Name
si:ch73-359m17.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-141222-90
See related
Ensembl:ENSDARG00000102119 AllianceGenome:ZFIN:ZDB-GENE-141222-90
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch73-359m17.2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (48382961..48391407, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (48723567..48732013, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101883623 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase ABHD5 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene testis and ovary specific TOPAZ 1 Neighboring gene si:ch1073-376c22.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Characterization of a binary tandem domain F-type lectin from striped bass (Morone saxatilis). Odom EW, et al. J Biol Chem, 2006 Jan 20. PMID 16251191
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables fucose binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of cellular defense response IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of complement activation, lectin pathway IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC799904
Names
III-FBPL

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083874.1 → NP_001077343.1  uncharacterized protein LOC799904 precursor

    See identical proteins and their annotated locations for NP_001077343.1

    Status: PREDICTED

    Source sequence(s)
    DQ141330
    UniProtKB/TrEMBL
    Q2LK84
    Related
    ENSDARP00000140121.1, ENSDART00000169577.2
    Conserved Domains (1) summary
    cl23730
    Location:166 → 304
    F5_F8_type_C; F5/8 type C domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    48382961..48391407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005170130.5 → XP_005170187.1  uncharacterized protein LOC799904 isoform X1

    See identical proteins and their annotated locations for XP_005170187.1

    UniProtKB/TrEMBL
    A0A8M2BHH5
    Conserved Domains (1) summary
    cl23730
    Location:167 → 305
    F5_F8_type_C; F5/8 type C domain

  2. XM_021468147.2 → XP_021323822.1  uncharacterized protein LOC799904 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BHH5
    Conserved Domains (1) summary
    cl23730
    Location:167 → 305
    F5_F8_type_C; F5/8 type C domain
Nucleotide Protein Strain
Heading Accession and Version

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