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RIP2 ROP interactive partner 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818284, updated on 15-Feb-2024

Summary

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Gene symbol
RIP2
Gene description
ROP interactive partner 3
Primary source
Araport:AT2G37080
Locus tag
AT2G37080
See related
TAIR:AT2G37080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ROP interactive partner 2; ROP interactive partner 3; T2N18.16; T2N18_16
Summary
Encodes RIP2 (ROP interactive partner 2), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).
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Genomic context

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See RIP2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (15581386..15585302, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B8 Neighboring gene TRIO/F-actin-binding protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene protamine P1 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Microtubule-associated ROP interactors affect microtubule dynamics and modulate cell wall patterning and root hair growth. Feiguelman G, et al. Development, 2022 Nov 15. PMID 36314989, Free PMC Article
  2. RIP1 (ROP Interactive Partner 1)/ICR1 marks pollen germination sites and may act in the ROP1 pathway in the control of polarized pollen growth. Li S, et al. Mol Plant, 2008 Nov. PMID 19825600, Free PMC Article
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
  5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336624.1
NM_001336625.1
NM_129264.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables microtubule binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in microtubule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ROP interactive partner 3
NP_181245.1
  • ROP interactive partner 3 (RIP3); LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 4 (TAIR:AT3G53350.1); Has 147635 Blast hits to 77239 proteins in 3391 species: Archae - 1987; Bacteria - 30902; Metazoa - 62424; Fungi - 12574; Plants - 8109; Viruses - 683; Other Eukaryotes - 30956 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15581386..15585302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129264.4 → NP_181245.1  ROP interactive partner 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181245.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWY7, Q9ZQC5
    UniProtKB/TrEMBL
    A0A178VLY5, A0A5S9X4R0, A0A654FA72
    Conserved Domains (1) summary
    COG1196
    Location:78 → 480
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. NM_001336624.1 → NP_001324128.1  ROP interactive partner 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWY7, Q9ZQC5
    UniProtKB/TrEMBL
    A0A178VLY5, A0A5S9X4R0, A0A654FA72
    Conserved Domains (1) summary
    COG1196
    Location:78 → 480
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. NM_001336625.1 → NP_001324129.1  ROP interactive partner 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VMG6, A0A1P8AZ83, A0A7G2EDW2
    Conserved Domains (1) summary
    COG1196
    Location:62 → 478
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZQC5.1

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