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ECT4 evolutionarily conserved C-terminal region 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841997, updated on 18-Sep-2024

Summary

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Official Symbol
ECT4
Official Full Name
evolutionarily conserved C-terminal region 4
Primary source
TAIR:AT1G55500
Locus tag
AT1G55500
See related
Araport:AT1G55500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
evolutionarily conserved C-terminal region 4; T5A14.10; T5A14_10
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Genomic context

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See ECT4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (20719473..20722856)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene protein containing PDZ domain, a K-box domain, and a TPR region Neighboring gene chaperonin 60 beta Neighboring gene branched-chain alpha-keto acid decarboxylase E1 beta subunit Neighboring gene TATA binding protein 2 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis. Arribas-Hernández L, et al. Development, 2020 Jul 24. PMID 32611605, Free PMC Article
  2. m(6)A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis. Song P, et al. Genome Biol, 2023 Apr 30. PMID 37122016, Free PMC Article
  3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. m[6]A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis.
    Title: m(6)A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis.
  2. Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.
    Title: Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.
Submit: New GeneRIF Correction

General gene information

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NM_104425.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA stabilization IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to abscisic acid IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
evolutionarily conserved C-terminal region 4
NP_001185240.1
  • evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
NP_001185241.1
  • evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
NP_564692.1
  • evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20719473..20722856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333713.1 → NP_001321787.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AS28, A0A5S9WPY4, A0A654EK64

  2. NM_001198311.2 → NP_001185240.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185240.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WPY4, A0A654EK64, F4I0C2
    Conserved Domains (2) summary
    pfam04146
    Location:414 → 552
    YTH; YT521-B-like domain
    pfam15305
    Location:361 → 407
    IFT43; Intraflagellar transport protein 43

  3. NM_001333714.1 → NP_001321789.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1P8AS03, Q94A30, Q9ZVU7
    UniProtKB/TrEMBL
    A0A178WG24
    Conserved Domains (2) summary
    pfam04146
    Location:414 → 552
    YTH; YT521-B-like domain
    pfam15305
    Location:361 → 407
    IFT43; Intraflagellar transport protein 43

  4. NM_001198312.2 → NP_001185241.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185241.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WG24, F4I0C1
    Conserved Domains (2) summary
    pfam04146
    Location:401 → 539
    YTH; YT521-B-like domain
    pfam15305
    Location:348 → 394
    IFT43; Intraflagellar transport protein 43

  5. NM_001333715.1 → NP_001321788.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WG24, A0A1P8AS00

  6. NM_104425.1 → NP_564692.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564692.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WG24
    Conserved Domains (2) summary
    pfam04146
    Location:358 → 496
    YTH; YT521-B-like domain
    pfam15305
    Location:305 → 351
    IFT43; Intraflagellar transport protein 43
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1P8AS03.1

Gene LinkOut

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