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LHCA3 PSI type III chlorophyll a/b-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842446, updated on 18-Sep-2024

Summary

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Official Symbol
LHCA3
Official Full Name
PSI type III chlorophyll a/b-binding protein
Primary source
TAIR:AT1G61520
Locus tag
AT1G61520
See related
Araport:AT1G61520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LHCA3*1; LHCI-680; photosystem I light harvesting complex gene 3; T25B24.12; T25B24_12
Summary
PSI type III chlorophyll a/b-binding protein (Lhca3*1)
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Genomic context

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See LHCA3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (22699715..22701412)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene S-locus lectin protein kinase family protein Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Probing the structure of Lhca3 by mutation analysis. Mozzo M, et al. Biochim Biophys Acta, 2006 Dec. PMID 16950167
  2. Lhca5 interaction with plant photosystem I. Lucinski R, et al. FEBS Lett, 2006 Nov 27. PMID 17107674
  3. The role of Lhca complexes in the supramolecular organization of higher plant photosystem I. Wientjes E, et al. J Biol Chem, 2009 Mar 20. PMID 19139095, Free PMC Article
  4. The PSI-K subunit of photosystem I is involved in the interaction between light-harvesting complex I and the photosystem I reaction center core. Jensen PE, et al. J Biol Chem, 2000 Aug 11. PMID 10818090
  5. Lhca5--an LHC-type protein associated with photosystem I. Ganeteg U, et al. Plant Mol Biol, 2004 Mar. PMID 15356385

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036140.1
NM_001198351.1
NM_104833.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chlorophyll binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to high light intensity IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to low light intensity stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in plastoglobule HDA PubMed 
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
PSI type III chlorophyll a/b-binding protein
NP_001031217.1
  • photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, chloroplast, plastoglobule, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001185280.1
  • photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2).
NP_176347.1
  • photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2); Has 2380 Blast hits to 2284 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2029; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22699715..22701412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198351.1 → NP_001185280.1  PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185280.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WR83, Q2V2R9, Q43381, Q8LCR7, Q9SY97
    UniProtKB/TrEMBL
    A0A178W5Y6, A0A5S9WR73
    Conserved Domains (1) summary
    PLN00048
    Location:18 → 273
    PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

  2. NM_104833.3 → NP_176347.1  PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176347.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WR83, Q2V2R9, Q43381, Q8LCR7, Q9SY97
    UniProtKB/TrEMBL
    A0A178W5Y6, A0A5S9WR73
    Conserved Domains (1) summary
    PLN00048
    Location:18 → 273
    PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

  3. NM_001036140.1 → NP_001031217.1  PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031217.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SY97
    Conserved Domains (2) summary
    PLN00048
    Location:5 → 218
    PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
    cl02879
    Location:14 → 215
    Chloroa_b-bind; Chlorophyll A-B binding protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SY97.1

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