TNC tenascin C [Homo sapiens (human)] - Gene

Summary

Official Symbol: TNCprovided by HGNC
Official Full Name: tenascin Cprovided by HGNC
Primary source: HGNC:HGNC:5318
See related: Ensembl:ENSG00000041982 MIM:187380; AllianceGenome:HGNC:5318
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: GP; JI; TN; HXB; GMEM; TN-C; DFNA56; 150-225
Summary: This gene encodes an extracellular matrix protein with a spatially and temporally restricted tissue distribution. This protein is homohexameric with disulfide-linked subunits, and contains multiple EGF-like and fibronectin type-III domains. It is implicated in guidance of migrating neurons as well as axons during development, synaptic plasticity, and neuronal regeneration. [provided by RefSeq, Jul 2011]
Expression: Broad expression in appendix (RPKM 76.9), endometrium (RPKM 19.4) and 15 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 9q33.1

Exon count:: 32

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	9	NC_000009.12 (115019575..115118157, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	9	NC_060933.1 (127212162..127310465, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	9	NC_000009.11 (117781854..117880436, complement)

Chromosome 9 - NC_000009.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Association of Tenascin-C Gene Polymorphisms with Risk of Acute Coronary Syndrome in South Indian Population: A Case-Control Genetic Association Study.
Title: Association of Tenascin-C Gene Polymorphisms with Risk of Acute Coronary Syndrome in South Indian Population: A Case-Control Genetic Association Study.
Engrailed 2 serves as a master regulator of the super-enhancer in the TNC gene locus in non-small cell lung cancer.
Title: Engrailed 2 serves as a master regulator of the super-enhancer in the TNC gene locus in non-small cell lung cancer.
Characteristics of n6-methyladenosine (m6A) regulators and role of FTO/TNC in scleroderma.
Title: Characteristics of n6-methyladenosine (m6A) regulators and role of FTO/TNC in scleroderma.
Caveolin-1-dependent tenascin C inclusion in extracellular vesicles is required to promote breast cancer cell malignancy.
Title: Caveolin-1-dependent tenascin C inclusion in extracellular vesicles is required to promote breast cancer cell malignancy.
The prognostic significance of the presence of tenascin-C in patients with stable coronary heart disease.
Title: The prognostic significance of the presence of tenascin-C in patients with stable coronary heart disease.
Tenascin-C-EGFR activation induces functional human satellite cell proliferation and promotes wound-healing of skeletal muscles via oleanic acid.
Title: Tenascin-C-EGFR activation induces functional human satellite cell proliferation and promotes wound-healing of skeletal muscles via oleanic acid.
Tenascins and osteopontin in biological response in cornea.
Title: Tenascins and osteopontin in biological response in cornea.
Tenascin-C in Tissue Repair after Myocardial Infarction in Humans.
Title: Tenascin-C in Tissue Repair after Myocardial Infarction in Humans.
Tenascin-C affects invasiveness of EGFR-mutated lung adenocarcinoma through a putative paracrine loop.
Title: Tenascin-C affects invasiveness of EGFR-mutated lung adenocarcinoma through a putative paracrine loop.
A virological view of tenascin-C in infection.
Title: A virological view of tenascin-C in infection.

Submit: New GeneRIF Correction See all GeneRIFs (252)

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description	Tests
Autosomal dominant nonsyndromic hearing loss 56 MedGen: C3810170 OMIM: 615629 GeneReviews: Not available	not available

EBI GWAS Catalog

Description
A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. EBI GWAS Catalog EBI GWAS CatalogPubMed
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

HIV-1 interactions

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Replication interactions

Interaction	Pubs
HIV-1 is inhibited by TNC (tenascin C), MUC1, and LTF (lactoferrin) as shown through neutralization assays in TZM-bl cells	PubMed

Protein interactions

Protein	Gene	Interaction	Pubs
Envelope surface glycoprotein gp120	env	Preincubation of HIV-1 gp160 and gp120 glycoproteins with soluble CD4 enhances the TNC binding, whereas antibodies against the V3 loop of the Env protein block the TNC binding	PubMed
	env	Tenascin-C (TNC), an extracellular matrix protein isolated from breast milk, has the HIV-1 neutralization activity by binding to HIV-1 gp160 and gp120 glycoproteins	PubMed
Envelope surface glycoprotein gp160, precursor	env	Preincubation of HIV-1 gp160 and gp120 glycoproteins with soluble CD4 enhances the TNC binding, whereas antibodies against the V3 loop of the Env protein block the TNC binding	PubMed
	env	Tenascin-C (TNC), an extracellular matrix protein isolated from breast milk, has the HIV-1 neutralization activity by binding to HIV-1 gp160 and gp120 glycoproteins	PubMed
Tat	tat	Microarray analysis indicates HIV-1 Tat-induced upregulation of tenascin C (TNC) in primary human brain microvascular endothelial cells	PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

RH48393 (e-PCR)
- UniSTS:51977

D11S2921 (e-PCR)
- UniSTS:152074

STS-AA029758 (e-PCR)
- UniSTS:74009

STS-M55618 (e-PCR)
- UniSTS:25911

WI-18981 (e-PCR)
- UniSTS:48958

AFM206ZE3 (e-PCR)
- UniSTS:70982

G66894 (e-PCR)
- UniSTS:166748

RH46318 (e-PCR)
- UniSTS:89188

RH67973 (e-PCR)
- UniSTS:52334

RH121986 (e-PCR)
- UniSTS:163214

D9S51 (e-PCR), detects polymorphism
- UniSTS:16289

D9S1713 (e-PCR)
- UniSTS:66983

STS-U44098 (e-PCR)
- UniSTS:60365

G15905 (e-PCR)
- UniSTS:6360

RH92351 (e-PCR)
- UniSTS:92396

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent	ISS Inferred from Sequence or Structural Similarity more info
enables extracellular matrix structural constituent	RCA inferred from Reviewed Computational Analysis more info	PubMed
enables integrin binding	IDA Inferred from Direct Assay more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables syndecan binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in bud outgrowth involved in lung branching	IEA Inferred from Electronic Annotation more info
involved_in cell adhesion	IEA Inferred from Electronic Annotation more info
involved_in cellular response to prostaglandin D stimulus	IEA Inferred from Electronic Annotation more info
involved_in cellular response to retinoic acid	IEA Inferred from Electronic Annotation more info
involved_in cellular response to vitamin D	IEA Inferred from Electronic Annotation more info
involved_in mesenchymal-epithelial cell signaling involved in prostate gland development	IEA Inferred from Electronic Annotation more info
involved_in morphogenesis of an epithelium	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of cell adhesion	IEA Inferred from Electronic Annotation more info
involved_in neuromuscular junction development	ISO Inferred from Sequence Orthology more info
involved_in odontogenesis of dentin-containing tooth	IEA Inferred from Electronic Annotation more info
involved_in osteoblast differentiation	HDA more info	PubMed
involved_in peripheral nervous system axon regeneration	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of cell population proliferation	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of gene expression	ISO Inferred from Sequence Orthology more info
involved_in prostate gland epithelium morphogenesis	IEA Inferred from Electronic Annotation more info
involved_in regulation of cell adhesion	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of cell adhesion	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of cell growth	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of cell migration	NAS Non-traceable Author Statement more info	PubMed
involved_in regulation of inflammatory response	ISO Inferred from Sequence Orthology more info
involved_in response to ethanol	IEA Inferred from Electronic Annotation more info
involved_in response to fibroblast growth factor	IEA Inferred from Electronic Annotation more info
involved_in response to mechanical stimulus	IEA Inferred from Electronic Annotation more info
involved_in response to wounding	IDA Inferred from Direct Assay more info	PubMed
involved_in response to wounding	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in basement membrane	ISO Inferred from Sequence Orthology more info
colocalizes_with collagen-containing extracellular matrix	HDA more info	PubMed
located_in collagen-containing extracellular matrix	HDA more info	PubMed
located_in collagen-containing extracellular matrix	IDA Inferred from Direct Assay more info	PubMed
colocalizes_with collagen-containing extracellular matrix	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in endoplasmic reticulum lumen	TAS Traceable Author Statement more info
located_in extracellular matrix of synaptic cleft	IEA Inferred from Electronic Annotation more info
located_in extracellular region	HDA more info	PubMed
located_in extracellular region	TAS Traceable Author Statement more info
located_in extracellular space	HDA more info	PubMed
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
located_in focal adhesion	HDA more info	PubMed
located_in glutamatergic synapse	IEA Inferred from Electronic Annotation more info
located_in interstitial matrix	IEA Inferred from Electronic Annotation more info
located_in membrane	HDA more info	PubMed
is_active_in perisynaptic extracellular matrix	IBA Inferred from Biological aspect of Ancestor more info
part_of tenascin complex	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: tenascin

Names: GP 150-225; cytotactin; deafness, autosomal dominant 56; glioma-associated-extracellular matrix antigen; hexabrachion (tenascin); myotendinous antigen; neuronectin; tenascin-C additional domain 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

NG_029637.1 RefSeqGene

Range

5101..103683

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001410991.1 → NP_001397920.1 tenascin isoform 2 precursor

Status: REVIEWED

Source sequence(s)

AL162425

Consensus CDS

CCDS94467.1

UniProtKB/TrEMBL

J3QSU6
NM_002160.4 → NP_002151.2 tenascin isoform 1 precursor

See identical proteins and their annotated locations for NP_002151.2

Status: REVIEWED

Source sequence(s)

AB210038, AI266750, AI964017, AK304015, BP279008, BU860660, BX100095, X78565

Consensus CDS

CCDS6811.1

UniProtKB/Swiss-Prot

C9IYT7, C9J575, C9J6D9, C9J848, P24821, Q14583, Q15567, Q5T7S3

UniProtKB/TrEMBL

Q4LE33

Related

ENSP00000265131.4, ENST00000350763.9

Conserved Domains (3) summary

pfam00147
Location:1980 → 2189

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain

pfam00041
Location:1888 → 1960

fn3; Fibronectin type III domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000009.12 Reference GRCh38.p14 Primary Assembly

Range

115019575..115118157 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005251975.5 → XP_005252032.1 tenascin isoform X22

UniProtKB/TrEMBL

F5H7V9

Related

ENSP00000443478.1, ENST00000537320.6

Conserved Domains (4) summary

cd00063
Location:624 → 710

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:1251 → 1323

fn3; Fibronectin type III domain

pfam00147
Location:1343 → 1552

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_005251974.5 → XP_005252031.1 tenascin isoform X19

UniProtKB/TrEMBL

F5H7V9

Conserved Domains (4) summary

cd00063
Location:624 → 710

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:1342 → 1414

fn3; Fibronectin type III domain

pfam00147
Location:1434 → 1643

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_047423330.1 → XP_047279286.1 tenascin isoform X21
XM_011518629.4 → XP_011516931.1 tenascin isoform X17

UniProtKB/TrEMBL

F5H7V9

Conserved Domains (5) summary

cd00063
Location:624 → 710

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:1433 → 1505

fn3; Fibronectin type III domain

pfam00147
Location:1525 → 1734

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain

cl19567
Location:486 → 527

DSL; Delta serrate ligand
XM_047423326.1 → XP_047279282.1 tenascin isoform X16
XM_011518626.4 → XP_011516928.1 tenascin isoform X13

UniProtKB/TrEMBL

F5H7V9

Related

ENSP00000442242.1, ENST00000542877.6

Conserved Domains (4) summary

cd00063
Location:624 → 710

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:1616 → 1688

fn3; Fibronectin type III domain

pfam00147
Location:1708 → 1917

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_017014681.3 → XP_016870170.1 tenascin isoform X10

UniProtKB/TrEMBL

F5H7V9
XM_006717101.5 → XP_006717164.1 tenascin isoform X20

UniProtKB/TrEMBL

F5H7V9

Conserved Domains (4) summary

smart00060
Location:1342 → 1414

FN3; Fibronectin type 3 domain

cd00063
Location:894 → 978

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd00087
Location:1433 → 1642

FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

pfam18720
Location:408 → 435

EGF_Tenascin; Tenascin EGF domain
XM_011518628.4 → XP_011516930.1 tenascin isoform X18

UniProtKB/TrEMBL

E9PC84

Conserved Domains (5) summary

cd00063
Location:624 → 710

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:1433 → 1505

fn3; Fibronectin type III domain

pfam00147
Location:1525 → 1734

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain

cl19567
Location:486 → 527

DSL; Delta serrate ligand
XM_047423324.1 → XP_047279280.1 tenascin isoform X14
XM_006717098.5 → XP_006717161.1 tenascin isoform X11

UniProtKB/TrEMBL

E9PC84, J3QSU6

Related

ENSP00000339553.4, ENST00000341037.8

Conserved Domains (4) summary

cd00063
Location:624 → 710

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:1706 → 1778

fn3; Fibronectin type III domain

pfam00147
Location:1798 → 2007

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_006717097.5 → XP_006717160.1 tenascin isoform X9

UniProtKB/TrEMBL

Q4LE33

Conserved Domains (3) summary

pfam00041
Location:1797 → 1869

fn3; Fibronectin type III domain

pfam00147
Location:1889 → 2098

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_047423312.1 → XP_047279268.1 tenascin isoform X5
XM_047423313.1 → XP_047279269.1 tenascin isoform X6
XM_017014679.3 → XP_016870168.1 tenascin isoform X3

UniProtKB/TrEMBL

Q4LE33
XM_005251973.5 → XP_005252030.1 tenascin isoform X15

UniProtKB/TrEMBL

E9PC84

Conserved Domains (4) summary

cd00063
Location:624 → 710

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:1524 → 1596

fn3; Fibronectin type III domain

pfam00147
Location:1616 → 1825

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_011518625.4 → XP_011516927.1 tenascin isoform X12

UniProtKB/TrEMBL

E9PC84

Related

ENSP00000411406.2, ENST00000423613.6

Conserved Domains (3) summary

pfam00041
Location:1706 → 1778

fn3; Fibronectin type III domain

pfam00147
Location:1798 → 2007

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_005251972.5 → XP_005252029.1 tenascin isoform X8

UniProtKB/TrEMBL

Q4LE33

Related

ENSP00000516085.1, ENST00000705192.1

Conserved Domains (3) summary

pfam00041
Location:1797 → 1869

fn3; Fibronectin type III domain

pfam00147
Location:1889 → 2098

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_006717096.5 → XP_006717159.1 tenascin isoform X2

UniProtKB/TrEMBL

Q4LE33

Conserved Domains (3) summary

pfam00041
Location:1980 → 2052

fn3; Fibronectin type III domain

pfam00147
Location:2072 → 2281

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain
XM_017014680.3 → XP_016870169.1 tenascin isoform X4

UniProtKB/TrEMBL

Q4LE33
XM_017014678.3 → XP_016870167.1 tenascin isoform X1

UniProtKB/TrEMBL

Q4LE33

Conserved Domains (3) summary

pfam00147
Location:2163 → 2372

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain

pfam00041
Location:2071 → 2143

fn3; Fibronectin type III domain
XM_047423331.1 → XP_047279287.1 tenascin isoform X22
XM_047423329.1 → XP_047279285.1 tenascin isoform X18
XM_047423325.1 → XP_047279281.1 tenascin isoform X14
XM_047423319.1 → XP_047279275.1 tenascin isoform X9
XM_047423314.1 → XP_047279270.1 tenascin isoform X5
XM_047423327.1 → XP_047279283.1 tenascin isoform X15
XM_047423322.1 → XP_047279278.1 tenascin isoform X12
XM_047423317.1 → XP_047279273.1 tenascin isoform X8
XM_047423315.1 → XP_047279271.1 tenascin isoform X7

UniProtKB/Swiss-Prot

C9IYT7, C9J575, C9J6D9, C9J848, P24821, Q14583, Q15567, Q5T7S3
XM_047423311.1 → XP_047279267.1 tenascin isoform X2
XM_024447530.2 → XP_024303298.1 tenascin isoform X1

UniProtKB/TrEMBL

Q4LE33

Conserved Domains (3) summary

pfam00147
Location:2163 → 2372

Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain

pfam07974
Location:468 → 496

EGF_2; EGF-like domain

pfam00041
Location:2071 → 2143

fn3; Fibronectin type III domain
XM_047423332.1 → XP_047279288.1 tenascin isoform X22
XM_047423320.1 → XP_047279276.1 tenascin isoform X9
XM_047423328.1 → XP_047279284.1 tenascin isoform X15
XM_047423323.1 → XP_047279279.1 tenascin isoform X12
XM_047423318.1 → XP_047279274.1 tenascin isoform X8
XM_047423316.1 → XP_047279272.1 tenascin isoform X7

UniProtKB/Swiss-Prot

C9IYT7, C9J575, C9J6D9, C9J848, P24821, Q14583, Q15567, Q5T7S3
XM_047423309.1 → XP_047279265.1 tenascin isoform X1
XM_047423310.1 → XP_047279266.1 tenascin isoform X1