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    Zfp316 zinc finger protein 316 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304293, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Zfp316provided by RGD
    Official Full Name
    zinc finger protein 316provided by RGD
    Primary source
    RGD:1311647
    See related
    EnsemblRapid:ENSRNOG00000001094 AllianceGenome:RGD:1311647
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF316 (zinc finger protein 316). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 19.7), Kidney (RPKM 19.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp316 in Genome Data Viewer
    Location:
    12p11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (16408032..16427427)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (11294445..11313841)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (13346414..13367374)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 15 Neighboring gene uncharacterized LOC108352423 Neighboring gene zinc finger protein 853 Neighboring gene zinc finger protein 12 Neighboring gene speedy/RINGO cell cycle regulator family member E4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 316

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107121.2 → NP_001100591.1  zinc finger protein 316

      See identical proteins and their annotated locations for NP_001100591.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A6K1L8, D4A8C4
      Conserved Domains (6) summary
      smart00349
      Location:151 → 211
      KRAB; krueppel associated box
      COG5048
      Location:760 → 947
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:847 → 867
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:845 → 867
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:151 → 190
      KRAB; KRAB box
      pfam13465
      Location:379 → 404
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      16408032..16427427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008768967.3 → XP_008767189.1  zinc finger protein 316 isoform X1

      See identical proteins and their annotated locations for XP_008767189.1

      UniProtKB/TrEMBL
      A6K1L8, D4A8C4
      Conserved Domains (6) summary
      smart00349
      Location:151 → 211
      KRAB; krueppel associated box
      COG5048
      Location:760 → 947
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:847 → 867
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:845 → 867
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:151 → 190
      KRAB; KRAB box
      pfam13465
      Location:379 → 404
      zf-H2C2_2; Zinc-finger double domain

    2. XM_008768965.4 → XP_008767187.1  zinc finger protein 316 isoform X1

      See identical proteins and their annotated locations for XP_008767187.1

      UniProtKB/TrEMBL
      A6K1L8, D4A8C4
      Conserved Domains (6) summary
      smart00349
      Location:151 → 211
      KRAB; krueppel associated box
      COG5048
      Location:760 → 947
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:847 → 867
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:845 → 867
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:151 → 190
      KRAB; KRAB box
      pfam13465
      Location:379 → 404
      zf-H2C2_2; Zinc-finger double domain

    3. XM_008768966.4 → XP_008767188.1  zinc finger protein 316 isoform X1

      See identical proteins and their annotated locations for XP_008767188.1

      UniProtKB/TrEMBL
      A6K1L8, D4A8C4
      Related
      ENSRNOP00000045973.4, ENSRNOT00000052327.6
      Conserved Domains (6) summary
      smart00349
      Location:151 → 211
      KRAB; krueppel associated box
      COG5048
      Location:760 → 947
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:847 → 867
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:845 → 867
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:151 → 190
      KRAB; KRAB box
      pfam13465
      Location:379 → 404
      zf-H2C2_2; Zinc-finger double domain

    4. XM_017598318.3 → XP_017453807.1  zinc finger protein 316 isoform X1

      UniProtKB/TrEMBL
      A6K1L8, D4A8C4
      Conserved Domains (6) summary
      smart00349
      Location:151 → 211
      KRAB; krueppel associated box
      COG5048
      Location:760 → 947
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:847 → 867
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:845 → 867
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:151 → 190
      KRAB; KRAB box
      pfam13465
      Location:379 → 404
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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