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    wbp1la WW domain binding protein 1-like a [ Danio rerio (zebrafish) ]

    Gene ID: 555492, updated on 17-Aug-2024

    Summary

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    Official Symbol
    wbp1laprovided by ZNC
    Official Full Name
    WW domain binding protein 1-like aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1961
    See related
    Ensembl:ENSDARG00000013245 AllianceGenome:ZFIN:ZDB-GENE-030131-1961
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb93b04; wu:fb93b04; zgc:136955; si:ch211-67n3.1
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human WBP1L (WW domain binding protein 1 like). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (28580394..28600338)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (28449944..28468165)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 4 Neighboring gene uncharacterized LOC108191933 Neighboring gene cytochrome P450, family 17, subfamily A, polypeptide 1 Neighboring gene BLOC-1 related complex subunit 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of p53-target genes in Danio rerio. Mandriani B, et al. Sci Rep, 2016 Sep 1. PMID 27581768, Free PMC Article
    2. Evolution of developmental regulation in the vertebrate FgfD subfamily. Jovelin R, et al. J Exp Zool B Mol Dev Evol, 2010 Jan 15. PMID 19562753, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    WW domain binding protein 1-like a; WW domain binding protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044333.2 → NP_001037798.2  WW domain binding protein 1-like a

      Status: VALIDATED

      Source sequence(s)
      AL928951
      UniProtKB/TrEMBL
      Q1ECU4
      Related
      ENSDARP00000009087.7, ENSDART00000007211.8

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      28580394..28600338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480585.1 → XP_021336260.1  WW domain binding protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A8M9QNE4, Q1ECU4
      Conserved Domains (2) summary
      pfam11669
      Location:22 → 123
      WBP-1; WW domain-binding protein 1
      pfam15694
      Location:123 → 235
      Med26_M; Mediator complex subunit 26 middle domain
    Nucleotide Protein Strain
    Heading Accession and Version

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