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    zgc:123010 zgc:123010 [ Danio rerio (zebrafish) ]

    Gene ID: 641500, updated on 17-Sep-2024

    Summary

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    Official Symbol
    zgc:123010provided by ZNC
    Official Full Name
    zgc:123010provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-051120-15
    See related
    Ensembl:ENSDARG00000039082 AllianceGenome:ZFIN:ZDB-GENE-051120-15
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fk11h08; wu:fk11h08
    Summary
    Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:123010 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (40247377..40282961, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (40121487..40157074, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene cartilage acidic protein 1b Neighboring gene uncharacterized LOC137487433 Neighboring gene lysyl oxidase-like 4 Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 2 Neighboring gene solute carrier family 25 member 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise. Boskovic S, et al. PLoS One, 2018. PMID 30252882, Free PMC Article
    2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC123010

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC641500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145554.1 → NP_001139026.1  uncharacterized protein LOC641500

      Status: PREDICTED

      Source sequence(s)
      CU462910
      UniProtKB/TrEMBL
      A0A8M1NRF0, B8JL34
      Related
      ENSDARP00000113359.1, ENSDART00000140875.3
      Conserved Domains (6) summary
      smart00360
      Location:343 → 409
      RRM; RNA recognition motif
      COG0724
      Location:337 → 411
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      sd00006
      Location:187 → 212
      TPR; TPR repeat [structural motif]
      pfam00642
      Location:444 → 465
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam07719
      Location:252 → 282
      TPR_2; Tetratricopeptide repeat
      pfam13414
      Location:187 → 249
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      40247377..40282961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307532.4 → XP_009305807.1  uncharacterized protein LOC641500 isoform X5

      UniProtKB/TrEMBL
      A0A8M3AZD6
      Conserved Domains (6) summary
      smart00360
      Location:366 → 432
      RRM; RNA recognition motif
      COG0724
      Location:360 → 434
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      sd00006
      Location:210 → 235
      TPR; TPR repeat [structural motif]
      pfam00642
      Location:467 → 488
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam07719
      Location:275 → 305
      TPR_2; Tetratricopeptide repeat
      pfam13414
      Location:210 → 272
      TPR_11; TPR repeat

    2. XM_068212931.1 → XP_068069032.1  uncharacterized protein LOC641500 isoform X4

    3. XM_068212932.1 → XP_068069033.1  uncharacterized protein LOC641500 isoform X7

    4. XM_068212930.1 → XP_068069031.1  uncharacterized protein LOC641500 isoform X3

    5. XM_009307531.4 → XP_009305806.1  uncharacterized protein LOC641500 isoform X6

      UniProtKB/TrEMBL
      A0A8M3BEU4
      Conserved Domains (6) summary
      smart00360
      Location:368 → 434
      RRM; RNA recognition motif
      COG0724
      Location:362 → 436
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      sd00006
      Location:212 → 237
      TPR; TPR repeat [structural motif]
      pfam00642
      Location:469 → 490
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam07719
      Location:277 → 307
      TPR_2; Tetratricopeptide repeat
      pfam13414
      Location:212 → 274
      TPR_11; TPR repeat

    6. XM_068212929.1 → XP_068069030.1  uncharacterized protein LOC641500 isoform X2

    7. XM_068212928.1 → XP_068069029.1  uncharacterized protein LOC641500 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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