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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_066624.1 RefSeqGene
- Range
-
6353..439754
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001363725.2 → NP_001350654.1 AT-rich interactive domain-containing protein 1B isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 3. The resulting isoform (4) is shorter at the N-terminus compared to isoform 3.
- Source sequence(s)
-
AL049820, AL591545
- Consensus CDS
-
CCDS87460.1
- UniProtKB/TrEMBL
- A0A1B0GVK1, A0A8J9GB59
- Related
- ENSP00000490550.1, ENST00000637904.1
- Conserved Domains (3) summary
-
- smart00501
Location:357 → 448
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- pfam09606
Location:470 → 850
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam12031
Location:1230 → 1485
- BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
-
NM_001371656.1 → NP_001358585.1 AT-rich interactive domain-containing protein 1B isoform 2
Status: REVIEWED
- Source sequence(s)
-
AL049820, AL162578, AL355297, AL591545
- Consensus CDS
-
CCDS55072.2
- UniProtKB/TrEMBL
-
A0A3F2YNW7
- Related
- ENSP00000344546.5, ENST00000346085.10
- Conserved Domains (3) summary
-
- pfam09606
Location:1263 → 1643
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cd16877
Location:1150 → 1242
- ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
- pfam12031
Location:2023 → 2278
- BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
-
NM_001374820.1 → NP_001361749.1 AT-rich interactive domain-containing protein 1B isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate in-frame exon and lacks another alternate in-frame exon compared to variant 3. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 3.
- Source sequence(s)
-
AL049820, AL162578, AL355297, AL591545
- Consensus CDS
-
CCDS55072.2
- UniProtKB/TrEMBL
-
A0A3F2YNW7
- Conserved Domains (3) summary
-
- pfam09606
Location:1263 → 1643
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cd16877
Location:1150 → 1242
- ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
- pfam12031
Location:2023 → 2278
- BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
-
NM_001374828.1 → NP_001361757.1 AT-rich interactive domain-containing protein 1B isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
- Source sequence(s)
-
AL049820, AL162578, AL355297, AL591545
- Consensus CDS
-
CCDS87459.2
- UniProtKB/TrEMBL
-
A0A6Q8NVI4
- Related
- ENSP00000490491.2, ENST00000636930.2
- Conserved Domains (5) summary
-
- PRK10263
Location:756 → 944
- PRK10263; DNA translocase FtsK; Provisional
- pfam09606
Location:1303 → 1683
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cd16877
Location:1190 → 1282
- ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
- pfam03154
Location:773 → 1128
- Atrophin-1; Atrophin-1 family
- pfam12031
Location:2063 → 2318
- BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
-
NM_017519.3 → NP_059989.3 AT-rich interactive domain-containing protein 1B isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) lacks an alternate in-frame exon compared to variant 3. The resulting isoform (1) has the same N- and C-termini but is shorter compared to isoform 3.
- Source sequence(s)
-
AL049820, AL162578, AL355297, AL591545
- Consensus CDS
-
CCDS5251.2
- UniProtKB/Swiss-Prot
- Q5JRD1, Q5VYC4, Q8IZY8, Q8NFD5, Q8TEV0, Q8TF02, Q99491, Q9ULI5
- Related
- ENSP00000055163.8, ENST00000350026.11
- Conserved Domains (4) summary
-
- PHA03307
Location:744 → 996
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam09606
Location:1250 → 1630
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cd16877
Location:1137 → 1229
- ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
- pfam12031
Location:2010 → 2265
- BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NG_032093.2: Suppressed sequence
- Description
- NG_032093.2: This RefSeq was removed because it was a RefSeqGene reference standard corresponding to LRG_861, which is being deprecated as the CDS was determined to be incorrectly annotated on the included reference transcripts.