U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:77614 zgc:77614 [ Danio rerio (zebrafish) ]

    Gene ID: 393868, updated on 19-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zgc:77614provided by ZNC
    Official Full Name
    zgc:77614provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1844
    See related
    Ensembl:ENSDARG00000114407 AllianceGenome:ZFIN:ZDB-GENE-040426-1844
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; forerunner cell group; neural plate; neural rod; and pronephric duct. [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zgc:77614 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (34443487..34445586)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (34525543..34527524)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RBBP6-like Neighboring gene E3 ubiquitin-protein ligase RBBP6-like Neighboring gene si:busm1-37i06.3 Neighboring gene uncharacterized LOC110440032

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC77614

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC393868

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200894.3 → NP_957188.1  uncharacterized protein LOC393868

      See identical proteins and their annotated locations for NP_957188.1

      Status: VALIDATED

      Source sequence(s)
      BX005399
      UniProtKB/TrEMBL
      A0A2R8QBJ7, A0A2R8RIC4, Q6P2V0
      Related
      ENSDARP00000147542.1, ENSDART00000187788.1
      Conserved Domains (1) summary
      pfam08783
      Location:4 → 72
      DWNN; DWNN domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      34443487..34445586
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304092.3 → XP_009302367.1  uncharacterized protein LOC393868 isoform X1

      See identical proteins and their annotated locations for XP_009302367.1

      UniProtKB/TrEMBL
      A0A8M6Z884
      Conserved Domains (2) summary
      COG5222
      Location:2 → 168
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam08783
      Location:4 → 72
      DWNN; DWNN domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394736.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      164214..166050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472110.1 → XP_021327785.1  uncharacterized protein LOC393868 isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z884
      Conserved Domains (2) summary
      COG5222
      Location:2 → 168
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam08783
      Location:4 → 72
      DWNN; DWNN domain

    2. XM_021472111.1 → XP_021327786.1  uncharacterized protein LOC393868 isoform X3

      Conserved Domains (1) summary
      pfam08783
      Location:4 → 72
      DWNN; DWNN domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.