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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001206938.2 → NP_001193867.2 TRPM8 channel-associated factor 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses a different splice site in the 3' coding region, which results in the use of an early stop codon, compared to variant 1. The resulting protein (isoform 2) has a shorter C-terminus when it is compared to isoform 1.
- Source sequence(s)
-
AC004742, AC099548
- Consensus CDS
-
CCDS56514.1
- Related
- ENSP00000348220.2, ENST00000355951.2
- Conserved Domains (2) summary
-
- pfam13402
Location:633 → 888
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
- pfam17291
Location:522 → 631
- M60-like_N; N-terminal domain of M60-like peptidases
-
NM_001206941.2 → NP_001193870.1 TRPM8 channel-associated factor 1 isoform 3
See identical proteins and their annotated locations for NP_001193870.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has several differences in its 5' UTR, one of which results in the use of a downstream in-frame start codon, compared to variant 1. The resulting protein (isoform 3) has a shorter N-terminus when it is compared to isoform 1.
- Source sequence(s)
-
AC004742, AC099548
- UniProtKB/TrEMBL
-
B4DST7
- Conserved Domains (1) summary
-
- pfam13402
Location:92 → 464
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
-
NM_014719.3 → NP_055534.2 TRPM8 channel-associated factor 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest protein (isoform 1).
- Source sequence(s)
-
AC004742, AC099548
- Consensus CDS
-
CCDS5886.1
- UniProtKB/Swiss-Prot
- A8K6E0, Q75KM8, Q75KM9, Q7L665, Q9BW63, Q9Y4C2
- Related
- ENSP00000419235.1, ENST00000479870.6
- Conserved Domains (1) summary
-
- pfam13402
Location:515 → 888
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
143851375..143902176 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006716191.3 → XP_006716254.1 TRPM8 channel-associated factor 1 isoform X1
See identical proteins and their annotated locations for XP_006716254.1
- UniProtKB/Swiss-Prot
- A8K6E0, Q75KM8, Q75KM9, Q7L665, Q9BW63, Q9Y4C2
- Conserved Domains (1) summary
-
- pfam13402
Location:515 → 888
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
-
XM_005250074.5 → XP_005250131.1 TRPM8 channel-associated factor 1 isoform X1
See identical proteins and their annotated locations for XP_005250131.1
- UniProtKB/Swiss-Prot
- A8K6E0, Q75KM8, Q75KM9, Q7L665, Q9BW63, Q9Y4C2
- Conserved Domains (1) summary
-
- pfam13402
Location:515 → 888
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
-
XM_005250075.4 → XP_005250132.1 TRPM8 channel-associated factor 1 isoform X1
See identical proteins and their annotated locations for XP_005250132.1
- UniProtKB/Swiss-Prot
- A8K6E0, Q75KM8, Q75KM9, Q7L665, Q9BW63, Q9Y4C2
- Conserved Domains (1) summary
-
- pfam13402
Location:515 → 888
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
-
XM_005250076.5 → XP_005250133.1 TRPM8 channel-associated factor 1 isoform X1
See identical proteins and their annotated locations for XP_005250133.1
- UniProtKB/Swiss-Prot
- A8K6E0, Q75KM8, Q75KM9, Q7L665, Q9BW63, Q9Y4C2
- Conserved Domains (1) summary
-
- pfam13402
Location:515 → 888
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
-
XM_005250077.3 → XP_005250134.1 TRPM8 channel-associated factor 1 isoform X1
See identical proteins and their annotated locations for XP_005250134.1
- UniProtKB/Swiss-Prot
- A8K6E0, Q75KM8, Q75KM9, Q7L665, Q9BW63, Q9Y4C2
- Conserved Domains (1) summary
-
- pfam13402
Location:515 → 888
- Peptidase_M60; Peptidase M60, enhancin and enhancin-like
Reference GRCh38.p14 PATCHES
Genomic
-
NW_018654714.1 Reference GRCh38.p14 PATCHES
- Range
-
395677..446423 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054332176.1 → XP_054188151.1 TRPM8 channel-associated factor 1 isoform X1
-
XM_054332172.1 → XP_054188147.1 TRPM8 channel-associated factor 1 isoform X1
-
XM_054332174.1 → XP_054188149.1 TRPM8 channel-associated factor 1 isoform X1
-
XM_054332173.1 → XP_054188148.1 TRPM8 channel-associated factor 1 isoform X1
-
XM_054332175.1 → XP_054188150.1 TRPM8 channel-associated factor 1 isoform X1
-
XM_054332177.1 → XP_054188152.1 TRPM8 channel-associated factor 1 isoform X2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
145131725..145182539 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054359420.1 → XP_054215395.1 TRPM8 channel-associated factor 1 isoform X2