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    pgdS gamma-DD-glutamyl hydrolase (PGA depolymerase) [ Bacillus subtilis subsp. subtilis str. 168 ]

    Gene ID: 936837, updated on 6-Aug-2024

    Summary

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    Gene symbol
    pgdS
    Gene description
    gamma-DD-glutamyl hydrolase (PGA depolymerase)
    Locus tag
    BSU_35860
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Old locus tag
    BSU35860
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    Genomic context

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    Sequence:
    NC_000964.3 (3696257..3697498, complement)

    NC_000964.3Genomic Context describing neighboring genes Neighboring gene teichoic acid-peptidoglycan tethering enzyme (LCP component) with transcription regulator domain of capsule synthesis Neighboring gene 5-amino-6-ribitylamino-2,4(1H, 3H)-pyrimidinedione 5'-phosphate phosphatase (promiscuous activity) Neighboring gene factor required extrachromosomal elements maintenance Neighboring gene capsular polyglutamate synthetase (acid resistance)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000964.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Solution scattering study of the Bacillus subtilis PgdS enzyme involved in poly-γ-glutamic acids degradation. Zeng J, et al. PLoS One, 2018. PMID 29608608, Free PMC Article
    2. Knockout of pgdS and ggt genes improves γ-PGA yield in B. subtilis. Scoffone V, et al. Biotechnol Bioeng, 2013 Jul. PMID 23335395
    3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
    4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
    5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    gamma-DD-glutamyl hydrolase (PGA depolymerase)
    NP_391467.1
    • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 12073126, 12644511, 16689787, 16952838, 26158264, 28664519; Product type e : enzyme

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000964.3 Reference assembly

      Range
      3696257..3697498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_391467.1 gamma-DD-glutamyl hydrolase (PGA depolymerase) [Bacillus subtilis subsp. subtilis str. 168]

      See identical proteins and their annotated locations for NP_391467.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAJ0JG83
      Conserved Domains (2) summary
      COG0791
      Location:296 → 408
      Spr; Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]
      pfam00877
      Location:178 → 285
      NLPC_P60; NlpC/P60 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P96740.2

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