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    SHH2 DNA-BINDING TRANSCRIPTION FACTOR 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821367, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SHH2
    Official Full Name
    DNA-BINDING TRANSCRIPTION FACTOR 2
    Primary source
    TAIR:AT3G18380
    Locus tag
    AT3G18380
    See related
    Araport:AT3G18380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DNA-BINDING TRANSCRIPTION FACTOR 2; DTF2; SAWADEE homeodomain homolog 2
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    Genomic context

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    See SHH2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (6310712..6313406, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene C2 domain-containing protein Neighboring gene CRS1 / YhbY (CRM) domain-containing protein Neighboring gene NAC domain containing protein 58

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202994.1
    NM_112723.3
    NM_202604.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-BINDING TRANSCRIPTION FACTOR 2
    NP_001189923.1
    • sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2).
    NP_188467.2
    • sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974333.1
    • sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6310712..6313406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112723.3 → NP_188467.2  DNA-BINDING TRANSCRIPTION FACTOR 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188467.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J7N6, F4J7N8, Q8RWJ7, Q9LS52
      UniProtKB/TrEMBL
      A0A178V9B7, A0A7G2ELP9
      Conserved Domains (2) summary
      smart00389
      Location:18 → 75
      HOX; Homeodomain
      pfam16719
      Location:141 → 269
      SAWADEE; SAWADEE domain

    2. NM_202604.3 → NP_974333.1  DNA-BINDING TRANSCRIPTION FACTOR 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9T0, A0A5S9XDV1, A0A654F8E9
      Conserved Domains (2) summary
      smart00389
      Location:18 → 75
      HOX; Homeodomain
      pfam16719
      Location:141 → 270
      SAWADEE; SAWADEE domain

    3. NM_001202994.1 → NP_001189923.1  DNA-BINDING TRANSCRIPTION FACTOR 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189923.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EJG0
      Conserved Domains (2) summary
      smart00389
      Location:18 → 75
      HOX; Homeodomain
      pfam16719
      Location:138 → 267
      SAWADEE; SAWADEE domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWJ7.1

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