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    ECT4 evolutionarily conserved C-terminal region 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841997, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECT4
    Official Full Name
    evolutionarily conserved C-terminal region 4
    Primary source
    TAIR:AT1G55500
    Locus tag
    AT1G55500
    See related
    Araport:AT1G55500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    evolutionarily conserved C-terminal region 4; T5A14.10; T5A14_10
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    Genomic context

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    See ECT4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (20719473..20722856)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene protein containing PDZ domain, a K-box domain, and a TPR region Neighboring gene chaperonin 60 beta Neighboring gene branched-chain alpha-keto acid decarboxylase E1 beta subunit Neighboring gene TATA binding protein 2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis. Arribas-Hernández L, et al. Development, 2020 Jul 24. PMID 32611605, Free PMC Article
    2. m(6)A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis. Song P, et al. Genome Biol, 2023 Apr 30. PMID 37122016, Free PMC Article
    3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. m[6]A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis.
      Title: m(6)A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis.
    2. Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.
      Title: Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_104425.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA stabilization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to abscisic acid IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    evolutionarily conserved C-terminal region 4
    NP_001185240.1
    • evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
    NP_001185241.1
    • evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
    NP_564692.1
    • evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20719473..20722856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333713.1 → NP_001321787.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AS28, A0A5S9WPY4, A0A654EK64

    2. NM_001198311.2 → NP_001185240.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185240.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WPY4, A0A654EK64, F4I0C2
      Conserved Domains (2) summary
      pfam04146
      Location:414 → 552
      YTH; YT521-B-like domain
      pfam15305
      Location:361 → 407
      IFT43; Intraflagellar transport protein 43

    3. NM_001333714.1 → NP_001321789.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8AS03, Q94A30, Q9ZVU7
      UniProtKB/TrEMBL
      A0A178WG24
      Conserved Domains (2) summary
      pfam04146
      Location:414 → 552
      YTH; YT521-B-like domain
      pfam15305
      Location:361 → 407
      IFT43; Intraflagellar transport protein 43

    4. NM_001198312.2 → NP_001185241.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185241.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WG24, F4I0C1
      Conserved Domains (2) summary
      pfam04146
      Location:401 → 539
      YTH; YT521-B-like domain
      pfam15305
      Location:348 → 394
      IFT43; Intraflagellar transport protein 43

    5. NM_001333715.1 → NP_001321788.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WG24, A0A1P8AS00

    6. NM_104425.1 → NP_564692.1  evolutionarily conserved C-terminal region 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564692.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WG24
      Conserved Domains (2) summary
      pfam04146
      Location:358 → 496
      YTH; YT521-B-like domain
      pfam15305
      Location:305 → 351
      IFT43; Intraflagellar transport protein 43
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1P8AS03.1

    Gene LinkOut

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