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    nicol1 NELL2 interacting cell ontogeny regulator 1 [ Danio rerio (zebrafish) ]

    Gene ID: 566718, updated on 2-Nov-2024

    Summary

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    Official Symbol
    nicol1provided by ZNC
    Official Full Name
    NELL2 interacting cell ontogeny regulator 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7914
    See related
    Ensembl:ENSDARG00000089877 AllianceGenome:ZFIN:ZDB-GENE-030131-7914
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj40g07; wu:fj40g07; si:dkeyp-75h12.5
    Summary
    Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in extracellular region. Orthologous to human NICOL1 (NELL2 interacting cell ontogeny regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See nicol1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (24486239..24491893, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (24215082..24220735, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene HAUS augmin-like complex, subunit 3 Neighboring gene polymerase (DNA directed) nu Neighboring gene N-acetyltransferase 8-like Neighboring gene negative elongation factor complex member A Neighboring gene fatty acid amide hydrolase 2b Neighboring gene bloodthirsty-related gene family, member 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons. Aoki M, et al. Biochem Biophys Res Commun, 2014 Mar 7. PMID 24513284
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within neuropeptide signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    NELL2-interacting cell ontogeny regulator 1
    NP_001373565.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386636.1 → NP_001373565.1  NELL2-interacting cell ontogeny regulator 1 precursor

      Status: VALIDATED

      Source sequence(s)
      CR318672
      UniProtKB/TrEMBL
      A0A8M9PKP2, E7FEX9
      Related
      ENSDARP00000142883.1, ENSDART00000173903.2
      Conserved Domains (1) summary
      pfam15161
      Location:21 → 81
      Neuropep_like; Neuropeptide-like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      24486239..24491893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394689.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      130482..136229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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