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    stxbp6l syntaxin binding protein 6 (amisyn), like [ Danio rerio (zebrafish) ]

    Gene ID: 100002110, updated on 2-Nov-2024

    Summary

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    Official Symbol
    stxbp6lprovided by ZNC
    Official Full Name
    syntaxin binding protein 6 (amisyn), likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040724-16
    See related
    Ensembl:ENSDARG00000028354 AllianceGenome:ZFIN:ZDB-GENE-040724-16
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:110123; si:dkey-29m11.7; si:dkey-63j12.1
    Summary
    Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See stxbp6l in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (9828967..9848293)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9839927..9861053)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene DDHD domain containing 1b Neighboring gene uncharacterized LOC137488616 Neighboring gene gap junction protein delta 2b Neighboring gene actin, alpha, cardiac muscle 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular Toxicity of Metal Oxide Nanoparticles in Danio rerio. Hou J, et al. Environ Sci Technol, 2018 Jul 17. PMID 29944347
    2. Identification of differentially expressed genes in the zebrafish hypothalamic-pituitary axis. Toro S, et al. Gene Expr Patterns, 2009 Apr. PMID 19166982, Free PMC Article
    3. Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective. Coppola U, et al. BMC Evol Biol, 2016 Jan 27. PMID 26818140, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC110123

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables phosphatidylinositol-4,5-bisphosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of exocyst IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    syntaxin binding protein 6 (amisyn), like
    Names
    syntaxin binding protein 6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020738.2 → NP_001018574.2  syntaxin binding protein 6 (amisyn), like

      See identical proteins and their annotated locations for NP_001018574.2

      Status: PROVISIONAL

      Source sequence(s)
      AL954679
      UniProtKB/TrEMBL
      A0A8M1N6F3, E7FEI5, Q5VSD0
      Related
      ENSDARP00000075137.5, ENSDART00000080691.6
      Conserved Domains (2) summary
      cd14681
      Location:2 → 130
      PH-STXBP6; PH-like domain of Syntaxin binding protein 6
      cl22856
      Location:227 → 276
      SNARE; SNARE motif

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      9828967..9848293
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468334.2 → XP_021324009.1  syntaxin binding protein 6 (amisyn), like isoform X1

      UniProtKB/TrEMBL
      A0A0R4IU85, A0A8M9PH32
      Related
      ENSDARP00000138234.1, ENSDART00000160480.3
      Conserved Domains (2) summary
      cd14681
      Location:2 → 130
      PH-STXBP6; PH-like domain of Syntaxin binding protein 6
      cl22856
      Location:228 → 277
      SNARE; SNARE motif

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395063.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      200714..214739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395343.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      95061..114387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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