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    scfd2 sec1 family domain containing 2 [ Danio rerio (zebrafish) ]

    Gene ID: 792105, updated on 28-Oct-2024

    Summary

    Official Symbol
    scfd2provided by ZNC
    Official Full Name
    sec1 family domain containing 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050320-143
    See related
    Ensembl:ENSDARG00000040005 AllianceGenome:ZFIN:ZDB-GENE-050320-143
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:110750; si:dkey-161n17.2
    Summary
    Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Orthologous to human SCFD2 (sec1 family domain containing 2). [provided by Alliance of Genome Resources, Oct 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    NEW
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    Genomic context

    See scfd2 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (22799871..22987764)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (22900198..23088664)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene ligand of numb-protein X 1 Neighboring gene FIP1 like 1a (S. cerevisiae) Neighboring gene uncharacterized LOC137488644 Neighboring gene uncharacterized LOC108180337 Neighboring gene RAS-like, family 11, member B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    sec1 family domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013564.2NP_001013582.1  sec1 family domain-containing protein 2

      See identical proteins and their annotated locations for NP_001013582.1

      Status: PROVISIONAL

      Source sequence(s)
      BC090478
      UniProtKB/TrEMBL
      Q5BLD9
      Related
      ENSDARP00000058526.5, ENSDART00000058527.7

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      22799871..22987764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395071.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      53798..235953
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)