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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_006558.3 → NP_006549.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3
See identical proteins and their annotated locations for NP_006549.1
Status: VALIDATED
- Source sequence(s)
-
AC040914, AF051321, BC032606, BC106028, CB155439
- Consensus CDS
-
CCDS6374.1
- UniProtKB/Swiss-Prot
- O75525, Q6NUL8, Q9UPA8
- Related
- ENSP00000348108.5, ENST00000355849.10
- Conserved Domains (3) summary
-
- pfam16274
Location:4 → 53
- Qua1; Qua1 domain
- pfam16568
Location:266 → 320
- Sam68-YY; Tyrosine-rich domain of Sam68
- cd22470
Location:48 → 160
- KH-I_KHDRBS3; type I K homology (KH) RNA-binding domain found in KH domain-containing, RNA-binding, signal transduction-associated protein 3 (KHDRBS3) and similar proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000008.11 Reference GRCh38.p14 Primary Assembly
- Range
-
135457456..135656516
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047421269.1 → XP_047277225.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1
-
XM_005250758.4 → XP_005250815.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X5
See identical proteins and their annotated locations for XP_005250815.1
- UniProtKB/TrEMBL
-
E5RJZ9
- Conserved Domains (3) summary
-
- pfam16274
Location:4 → 53
- Qua1; Qua1 domain
- pfam16568
Location:266 → 296
- Sam68-YY; Tyrosine-rich domain of Sam68
- cd22470
Location:48 → 160
- KH-I_KHDRBS3; type I K homology (KH) RNA-binding domain found in KH domain-containing, RNA-binding, signal transduction-associated protein 3 (KHDRBS3) and similar proteins
-
XM_011516798.2 → XP_011515100.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X4
- UniProtKB/TrEMBL
-
E5RJZ9
- Conserved Domains (2) summary
-
- cd02395
Location:58 → 177
- SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
- pfam16274
Location:5 → 53
- Qua1; Qua1 domain
-
XM_011516799.2 → XP_011515101.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X7
- Conserved Domains (2) summary
-
- cd02395
Location:58 → 177
- SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
- pfam16274
Location:5 → 53
- Qua1; Qua1 domain
-
XM_047421268.1 → XP_047277224.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1
-
XM_005250757.4 → XP_005250814.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X3
- UniProtKB/TrEMBL
-
E5RJZ9
- Conserved Domains (3) summary
-
- pfam16274
Location:2 → 25
- Qua1; Qua1 domain
- pfam16568
Location:238 → 292
- Sam68-YY; Tyrosine-rich domain of Sam68
- cl00098
Location:20 → 132
- KH-I; K homology (KH) RNA-binding domain, type I
-
XM_024447052.2 → XP_024302820.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X6
- UniProtKB/TrEMBL
-
E5RJZ9
- Related
- ENSP00000431022.1, ENST00000524199.5
- Conserved Domains (3) summary
-
- cd02395
Location:30 → 149
- SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
- pfam16274
Location:2 → 25
- Qua1; Qua1 domain
- pfam16568
Location:238 → 268
- Sam68-YY; Tyrosine-rich domain of Sam68
-
XM_011516797.3 → XP_011515099.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X2
See identical proteins and their annotated locations for XP_011515099.1
- UniProtKB/TrEMBL
-
E5RJZ9
- Conserved Domains (3) summary
-
- pfam16274
Location:1 → 26
- Qua1; Qua1 domain
- pfam16568
Location:239 → 293
- Sam68-YY; Tyrosine-rich domain of Sam68
- cd22470
Location:21 → 133
- KH-I_KHDRBS3; type I K homology (KH) RNA-binding domain found in KH domain-containing, RNA-binding, signal transduction-associated protein 3 (KHDRBS3) and similar proteins
RNA
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XR_242372.3 RNA Sequence
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XR_001745458.2 RNA Sequence
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XR_928287.2 RNA Sequence
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XR_001745455.2 RNA Sequence
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XR_001745457.2 RNA Sequence
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XR_001745456.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060932.1 Alternate T2T-CHM13v2.0
- Range
-
136575311..136774451
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054359589.1 → XP_054215564.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1
-
XM_054359593.1 → XP_054215568.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X5
-
XM_054359592.1 → XP_054215567.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X4
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XM_054359595.1 → XP_054215570.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X7
-
XM_054359591.1 → XP_054215566.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X3
-
XM_054359594.1 → XP_054215569.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X6
-
XM_054359590.1 → XP_054215565.1 KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X2
RNA
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XR_008487793.1 RNA Sequence
-
XR_008487798.1 RNA Sequence
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XR_008487797.1 RNA Sequence
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XR_008487794.1 RNA Sequence
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XR_008487796.1 RNA Sequence
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XR_008487795.1 RNA Sequence