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    WDR54 WD repeat domain 54 [ Canis lupus familiaris (dog) ]

    Gene ID: 475789, updated on 17-Aug-2024

    Summary

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    Official Symbol
    WDR54provided by VGNC
    Official Full Name
    WD repeat domain 54provided by VGNC
    Primary source
    VGNC:VGNC:48375
    See related
    Ensembl:ENSCAFG00845019604
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See WDR54 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (49559726..49593603, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (48342069..48375651, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (49201309..49235141, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (48576773..48610446, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (48643308..48676908, complement)

    Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene INO80 complex subunit B Neighboring gene rhotekin Neighboring gene chromosome 17 C2orf81 homolog Neighboring gene dynactin subunit 1 Neighboring gene adaptin ear-binding coat-associated protein 1-like Neighboring gene solute carrier family 4 member 5 Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cilium-dependent cell motility IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sperm axoneme assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat-containing protein 54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051821.1 Reference ROS_Cfam_1.0

      Range
      49559726..49593603 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038691693.1 → XP_038547621.1  WD repeat-containing protein 54

      UniProtKB/TrEMBL
      A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    2. XM_038691692.1 → XP_038547620.1  WD repeat-containing protein 54

      UniProtKB/TrEMBL
      A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
      Related
      ENSCAFP00845027149.1, ENSCAFT00845034665.1
      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049277.1 Alternate UMICH_Zoey_3.1

      Range
      48576773..48610446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038499134.1 → XP_038355062.1  WD repeat-containing protein 54

      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    2. XM_038499133.1 → XP_038355061.1  WD repeat-containing protein 54

      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

      Range
      48643308..48676908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038625763.1 → XP_038481691.1  WD repeat-containing protein 54

      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    2. XM_038625762.1 → XP_038481690.1  WD repeat-containing protein 54

      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

      Range
      49201309..49235141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038561721.1 → XP_038417649.1  WD repeat-containing protein 54

      UniProtKB/TrEMBL
      A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    2. XM_038561720.1 → XP_038417648.1  WD repeat-containing protein 54

      UniProtKB/TrEMBL
      A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      48342069..48375651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005630547.4 → XP_005630604.1  WD repeat-containing protein 54

      See identical proteins and their annotated locations for XP_005630604.1

      UniProtKB/TrEMBL
      A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]

    2. XM_005630546.4 → XP_005630603.1  WD repeat-containing protein 54

      See identical proteins and their annotated locations for XP_005630603.1

      UniProtKB/TrEMBL
      A0A8C0KMI2, A0A8C0RPD1, A0A8I3P636
      Conserved Domains (2) summary
      COG2319
      Location:128 → 324
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72 → 118
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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