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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001282656.2 → NP_001269585.1 zinc finger protein 143 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is 1 aa shorter than isoform 1.
- Source sequence(s)
-
AK297214, AK313330, BF515092, BG825506, CN295530
- Consensus CDS
-
CCDS60720.1
- UniProtKB/TrEMBL
-
E7EN86
- Related
- ENSP00000432154.1, ENST00000530463.5
- Conserved Domains (4) summary
-
- COG5048
Location:263 → 321
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:238 → 260
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:312 → 339
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:298 → 413
- zf-C2H2_8; C2H2-type zinc ribbon
-
NM_001282657.2 → NP_001269586.1 zinc finger protein 143 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (3) that is shorter than isoform 1.
- Source sequence(s)
-
AK297214, BC014458, BF515092, BG825506, CN295530
- Consensus CDS
-
CCDS60721.1
- UniProtKB/TrEMBL
-
E7EN86
- Related
- ENSP00000379843.3, ENST00000396597.7
- Conserved Domains (5) summary
-
- COG5048
Location:233 → 291
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:208 → 230
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:282 → 309
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:268 → 383
- zf-C2H2_8; C2H2-type zinc ribbon
- cl00342
Location:51 → 161
- Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
-
NM_003442.6 → NP_003433.3 zinc finger protein 143 isoform 1
See identical proteins and their annotated locations for NP_003433.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AK297214, AW162015, BC020219, BG825506
- Consensus CDS
-
CCDS7799.2
- UniProtKB/Swiss-Prot
- A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
- UniProtKB/TrEMBL
-
E7EN86
- Related
- ENSP00000379847.2, ENST00000396602.7
- Conserved Domains (5) summary
-
- COG5048
Location:264 → 322
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:239 → 261
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:313 → 340
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:299 → 414
- zf-C2H2_8; C2H2-type zinc ribbon
- cl00342
Location:82 → 192
- Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
9461012..9528524
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047427553.1 → XP_047283509.1 zinc finger protein 143 isoform X5
- UniProtKB/Swiss-Prot
- A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
-
XM_047427557.1 → XP_047283513.1 zinc finger protein 143 isoform X6
-
XM_047427552.1 → XP_047283508.1 zinc finger protein 143 isoform X5
- UniProtKB/Swiss-Prot
- A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
-
XM_011520349.3 → XP_011518651.1 zinc finger protein 143 isoform X5
See identical proteins and their annotated locations for XP_011518651.1
- UniProtKB/Swiss-Prot
- A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
- UniProtKB/TrEMBL
-
E7EN86
- Conserved Domains (5) summary
-
- COG5048
Location:264 → 322
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:239 → 261
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:313 → 340
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:299 → 414
- zf-C2H2_8; C2H2-type zinc ribbon
- cl00342
Location:82 → 192
- Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
-
XM_047427556.1 → XP_047283512.1 zinc finger protein 143 isoform X6
-
XM_047427559.1 → XP_047283515.1 zinc finger protein 143 isoform X7
-
XM_005253121.2 → XP_005253178.1 zinc finger protein 143 isoform X1
- UniProtKB/TrEMBL
-
E7EN86
- Conserved Domains (5) summary
-
- COG5048
Location:279 → 337
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:254 → 276
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:328 → 355
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:314 → 429
- zf-C2H2_8; C2H2-type zinc ribbon
- cl00342
Location:97 → 207
- Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
-
XM_005253122.2 → XP_005253179.1 zinc finger protein 143 isoform X2
- UniProtKB/TrEMBL
-
E7EN86
- Conserved Domains (4) summary
-
- COG5048
Location:278 → 336
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:253 → 275
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:327 → 354
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:313 → 428
- zf-C2H2_8; C2H2-type zinc ribbon
-
XM_017018252.2 → XP_016873741.1 zinc finger protein 143 isoform X3
- UniProtKB/TrEMBL
-
E7EN86
-
XM_017018253.2 → XP_016873742.1 zinc finger protein 143 isoform X4
- UniProtKB/TrEMBL
-
E7EN86
-
XM_047427554.1 → XP_047283510.1 zinc finger protein 143 isoform X5
- UniProtKB/Swiss-Prot
- A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
-
XM_017018254.3 → XP_016873743.1 zinc finger protein 143 isoform X6
- UniProtKB/TrEMBL
-
E7EN86
- Conserved Domains (4) summary
-
- COG5048
Location:263 → 321
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:238 → 260
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:312 → 339
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:298 → 413
- zf-C2H2_8; C2H2-type zinc ribbon
-
XM_047427560.1 → XP_047283516.1 zinc finger protein 143 isoform X7
-
XM_047427555.1 → XP_047283511.1 zinc finger protein 143 isoform X5
- UniProtKB/Swiss-Prot
- A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
-
XM_017018255.2 → XP_016873744.1 zinc finger protein 143 isoform X6
- UniProtKB/TrEMBL
-
E7EN86
- Conserved Domains (4) summary
-
- COG5048
Location:263 → 321
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:238 → 260
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:312 → 339
- zf-H2C2_2; Zinc-finger double domain
- pfam15909
Location:298 → 413
- zf-C2H2_8; C2H2-type zinc ribbon
-
XM_047427558.1 → XP_047283514.1 zinc finger protein 143 isoform X7
-
XM_047427561.1 → XP_047283517.1 zinc finger protein 143 isoform X8
-
XM_047427562.1 → XP_047283518.1 zinc finger protein 143 isoform X8
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
9546141..9612748
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054369870.1 → XP_054225845.1 zinc finger protein 143 isoform X1
-
XM_054369871.1 → XP_054225846.1 zinc finger protein 143 isoform X2
-
XM_054369872.1 → XP_054225847.1 zinc finger protein 143 isoform X3
-
XM_054369873.1 → XP_054225848.1 zinc finger protein 143 isoform X4
-
XM_054369881.1 → XP_054225856.1 zinc finger protein 143 isoform X6
-
XM_054369876.1 → XP_054225851.1 zinc finger protein 143 isoform X5
-
XM_054369877.1 → XP_054225852.1 zinc finger protein 143 isoform X5
-
XM_054369880.1 → XP_054225855.1 zinc finger protein 143 isoform X6
-
XM_054369884.1 → XP_054225859.1 zinc finger protein 143 isoform X7
-
XM_054369878.1 → XP_054225853.1 zinc finger protein 143 isoform X5
-
XM_054369875.1 → XP_054225850.1 zinc finger protein 143 isoform X6
-
XM_054369885.1 → XP_054225860.1 zinc finger protein 143 isoform X7
-
XM_054369879.1 → XP_054225854.1 zinc finger protein 143 isoform X5
-
XM_054369882.1 → XP_054225857.1 zinc finger protein 143 isoform X6
-
XM_054369883.1 → XP_054225858.1 zinc finger protein 143 isoform X7
-
XM_054369874.1 → XP_054225849.1 zinc finger protein 143 isoform X5
-
XM_054369886.1 → XP_054225861.1 zinc finger protein 143 isoform X8
-
XM_054369887.1 → XP_054225862.1 zinc finger protein 143 isoform X8