U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    SPATA8 spermatogenesis associated 8 [ Homo sapiens (human) ]

    Gene ID: 145946, updated on 22-Oct-2024

    Summary

    Official Symbol
    SPATA8provided by HGNC
    Official Full Name
    spermatogenesis associated 8provided by HGNC
    Primary source
    HGNC:HGNC:28676
    See related
    Ensembl:ENSG00000185594 MIM:613948; AllianceGenome:HGNC:28676
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SRG8
    Expression
    Restricted expression toward testis (RPKM 123.5) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SPATA8 in Genome Data Viewer
    Location:
    15q26.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (96783435..96785615)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (94548068..94550248)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (97326665..97328845)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 149, member B2 Neighboring gene SPATA8 antisense RNA 1 (head to head) Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:97339270-97340469 Neighboring gene RN7SK pseudogene 181 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:97420533-97421163 Neighboring gene uncharacterized LOC105371004

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.
    EBI GWAS Catalog
    GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.
    EBI GWAS Catalog
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog
    The Contribution of Common Genetic Variation to Nicotine and Cotinine Glucuronidation in Multiple Ethnic/Racial Populations.
    EBI GWAS Catalog

    Interactions

    General gene information

    Other Names

    • spermatogenesis-associated protein 8
    • spermatogenesis-related gene 8
    • spermatogenesis-related protein 8
    • testicular secretory protein Li 52

    Clone Names

    • MGC44294, MGC102678

    Gene Ontology Provided by GOA

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_158220.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AY489187, BC033979, DB456215
      Related
      ENST00000649986.2
    2. NR_158221.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC033979, DB456215, HY047940
    3. NR_158222.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AY489187, BC033979, HY034703
    4. NR_158223.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AY489187, BC033979, DB456215, HY024478
      Related
      ENST00000558553.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      96783435..96785615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      94548068..94550248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    External link. Please review our privacy policy.