zc3h10 zinc finger CCCH-type containing 10 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zc3h10provided by ZNC
Official Full Name: zinc finger CCCH-type containing 10provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2359
See related: Ensembl:ENSDARG00000030335 AllianceGenome:ZFIN:ZDB-GENE-040426-2359
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:77248; SI:zC239J9.3
Summary: Predicted to enable RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human ZC3H10 (zinc finger CCCH-type containing 10). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (52242255..52253624)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (52242256..52253625)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of RNA splicing	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger CCCH domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_207098.1 → NP_996981.1 zinc finger CCCH domain-containing protein 10

See identical proteins and their annotated locations for NP_996981.1

Status: PROVISIONAL

Source sequence(s)

BC066420

UniProtKB/TrEMBL

Q6NYY1, Q6ZM22

Related

ENSDARP00000041548.3, ENSDART00000041549.4

Conserved Domains (2) summary

smart00356
Location:168 → 191

ZnF_C3H1; zinc finger

cl19252
Location:351 → 437

MreC; rod shape-determining protein MreC