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    ttll4 tubulin tyrosine ligase-like family, member 4 [ Danio rerio (zebrafish) ]

    Gene ID: 558702, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ttll4provided by ZNC
    Official Full Name
    tubulin tyrosine ligase-like family, member 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-313
    See related
    Ensembl:ENSDARG00000078935 AllianceGenome:ZFIN:ZDB-GENE-070912-313
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-67e16.9
    Summary
    Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Is expressed in alar plate midbrain region; immature eye; lens; optic tectum; and optic vesicle. Orthologous to human TTLL4 (tubulin tyrosine ligase like 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See ttll4 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (14112475..14143371, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (14141281..14176825, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene fer-1 like family member 6 Neighboring gene protein kinase, AMP-activated, gamma 3b non-catalytic subunit Neighboring gene si:ch211-67e16.11 Neighboring gene ATP binding cassette subfamily B member 6 (LAN blood group) b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Tubulin tyrosine ligase-like genes ttll3 and ttll6 maintain zebrafish cilia structure and motility. Pathak N, et al. J Biol Chem, 2011 Apr 1. PMID 21262966, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables tubulin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables tubulin-glutamic acid ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    tubulin monoglutamylase TTLL4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104938.2 → NP_001098408.2  tubulin monoglutamylase TTLL4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL929266, BC151972
      UniProtKB/TrEMBL
      A0A8M2BFJ4
      Related
      ENSDARP00000098039.1, ENSDART00000114529.3
      Conserved Domains (1) summary
      pfam03133
      Location:102 → 382
      TTL; Tubulin-tyrosine ligase family

    2. NM_001430833.1 → NP_001417762.1  tubulin monoglutamylase TTLL4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL929266
      UniProtKB/TrEMBL
      A0A8M1RM67, F1Q6C4
      Related
      ENSDARP00000103885.2, ENSDART00000108950.4

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      14112475..14143371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478862.2 → XP_021334537.1  tubulin monoglutamylase TTLL4 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PSM2
      Conserved Domains (1) summary
      pfam03133
      Location:138 → 418
      TTL; Tubulin-tyrosine ligase family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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