NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_016782.2 RefSeqGene
- Range
-
5000..58377
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001941.5 → NP_001932.2 desmocollin-3 isoform Dsc3a preproprotein
See identical proteins and their annotated locations for NP_001932.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (Dsc3a) represents the shorter transcript but encodes the longer isoform (Dsc3a).
- Source sequence(s)
-
AC025212, AI123917, D17427, DA860471
- Consensus CDS
-
CCDS32810.1
- UniProtKB/Swiss-Prot
- A6NN35, Q14200, Q14574, Q9HAZ9
- UniProtKB/TrEMBL
-
A8K6T3
- Related
- ENSP00000353608.4, ENST00000360428.9
- Conserved Domains (5) summary
-
- cd11304
Location:247 → 351
- Cadherin_repeat; Cadherin tandem repeat domain
- smart01055
Location:27 → 111
- Cadherin_pro; Cadherin prodomain like
- pfam00028
Location:360 → 462
- Cadherin; Cadherin domain
- pfam01049
Location:829 → 891
- Cadherin_C; Cadherin cytoplasmic region
- cl09101
Location:596 → 669
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
-
NM_024423.4 → NP_077741.2 desmocollin-3 isoform Dsc3b preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (Dsc3b) includes an additional exon in the 3' region and it thus differs in its 3' coding region and 3' UTR, compared to variant Dsc3a. The encoded isoform (Dsc3b) has a distinct C-terminus and is shorter than isoform Dsc3a. There are no publicly available full-length transcripts representing this variant, but it is supported by mRNA annotation on DNA accession AF293359.1, and by data in PMIDs 7929347 and 11027496.
- Source sequence(s)
-
AC025212, AI123917, BG214334, BG697535, D17427, DA860471
- UniProtKB/TrEMBL
-
A8K6T3
- Related
- ENSP00000392068.1, ENST00000434452.5
- Conserved Domains (4) summary
-
- cd11304
Location:247 → 351
- Cadherin_repeat; Cadherin tandem repeat domain
- smart01055
Location:27 → 111
- Cadherin_pro; Cadherin prodomain like
- pfam00028
Location:360 → 462
- Cadherin; Cadherin domain
- cl09101
Location:596 → 669
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000018.10 Reference GRCh38.p14 Primary Assembly
- Range
-
30989365..31042742 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060942.1 Alternate T2T-CHM13v2.0
- Range
-
31179590..31233008 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)