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    zgc:152938 zgc:152938 [ Danio rerio (zebrafish) ]

    Gene ID: 768145, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:152938provided by ZNC
    Official Full Name
    zgc:152938provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-458
    See related
    Ensembl:ENSDARG00000102586 AllianceGenome:ZFIN:ZDB-GENE-061013-458
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:152938 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (73049100..73064999)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (71390387..71405841)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein OZF Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene zinc finger protein 260-like Neighboring gene zinc finger protein 239-like Neighboring gene si:ch73-170d6.2 Neighboring gene si:ch73-170d6.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC768145

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077288.1 → NP_001070756.1  uncharacterized protein LOC768145

      See identical proteins and their annotated locations for NP_001070756.1

      Status: PREDICTED

      Source sequence(s)
      BC124607
      UniProtKB/TrEMBL
      Q08BQ9
      Related
      ENSDARP00000143198.1, ENSDART00000174219.2
      Conserved Domains (2) summary
      pfam02944
      Location:226 → 260
      BESS; BESS motif
      pfam10545
      Location:60 → 128
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      73049100..73064999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005174390.5 → XP_005174447.1  uncharacterized protein LOC768145 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IGU7, A0A8M2BLM8
      Conserved Domains (2) summary
      pfam02944
      Location:226 → 260
      BESS; BESS motif
      pfam10545
      Location:60 → 128
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like
    Nucleotide Protein
    Heading Accession and Version

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