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    znf1141 zinc finger protein 1141 [ Danio rerio (zebrafish) ]

    Gene ID: 100005493, updated on 2-Nov-2024

    Summary

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    Official Symbol
    znf1141provided by ZNC
    Official Full Name
    zinc finger protein 1141provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110913-35
    See related
    Ensembl:ENSDARG00000116625 AllianceGenome:ZFIN:ZDB-GENE-110913-35
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:173614; si:dkey-82i20.3
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See znf1141 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (51160344..51180867)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (49415515..49428888, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101883177 Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene si:dkey-82i20.1 Neighboring gene gastrula zinc finger protein XlCGF57.1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC100005493

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423385.1 → NP_001410314.1  uncharacterized protein LOC100005493

      Status: VALIDATED

      Source sequence(s)
      BX005380
      Related
      ENSDARP00000146685.1, ENSDART00000189984.1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      51160344..51180867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219467.1 → XP_068075568.1  uncharacterized protein LOC100005493 isoform X1

    2. XM_068219466.1 → XP_068075567.1  uncharacterized protein LOC100005493 isoform X1

    3. XM_068219469.1 → XP_068075570.1  uncharacterized protein LOC100005493 isoform X2

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001114481.1: Suppressed sequence

      Description
      NM_001114481.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: ZNF808 (GeneID:388558).
    Nucleotide Protein
    Heading Accession and Version

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