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    zgc:175107 zgc:175107 [ Danio rerio (zebrafish) ]

    Gene ID: 794317, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:175107provided by ZNC
    Official Full Name
    zgc:175107provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080220-38
    See related
    Ensembl:ENSDARG00000075417 AllianceGenome:ZFIN:ZDB-GENE-080220-38
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:175107 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (72529793..72548913, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (70873685..70883701, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene cytolytic toxin-alpha-like Neighboring gene cytolytic toxin-alpha-like Neighboring gene si:ch211-161m3.4 Neighboring gene si:cabz01054396.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables chromatin insulator sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC794317

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113632.1 → NP_001107104.1  uncharacterized protein LOC794317

      See identical proteins and their annotated locations for NP_001107104.1

      Status: VALIDATED

      Source sequence(s)
      BC154831
      UniProtKB/TrEMBL
      A8WGS6
      Related
      ENSDARP00000100782.3, ENSDART00000110261.4
      Conserved Domains (4) summary
      COG5048
      Location:107 → 286
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:111 → 131
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:165 → 187
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:95 → 120
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      72529793..72548913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219742.1 → XP_068075843.1  uncharacterized protein LOC794317 isoform X1

    2. XM_068219741.1 → XP_068075842.1  uncharacterized protein LOC794317 isoform X1

    3. XM_068219743.1 → XP_068075844.1  uncharacterized protein LOC794317 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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