nop58 NOP58 ribonucleoprotein homolog (yeast) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nop58provided by ZNC
Official Full Name: NOP58 ribonucleoprotein homolog (yeast)provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2140
See related: Ensembl:ENSDARG00000104353 AllianceGenome:ZFIN:ZDB-GENE-040426-2140
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: nol5; zgc:65841; NOP5/NOP58; wu:fa93b01
Summary: Predicted to enable snoRNA binding activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex and small-subunit processome. Is expressed in several structures, including axial vasculature; digestive system; musculature system; nervous system; and pectoral fin bud. Orthologous to human NOP58 (NOP58 ribonucleoprotein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 6

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (9663779..9676108, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (9428240..9440569, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Markers

fc66a04.x1 (e-PCR)
- UniSTS:194209

fa93b01 (e-PCR)
- UniSTS:188868

AW175054 (e-PCR)
- UniSTS:205784

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables snoRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables snoRNA binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of box C/D methylation guide snoRNP complex	IBA Inferred from Biological aspect of Ancestor more info
part_of box C/D methylation guide snoRNP complex	IEA Inferred from Electronic Annotation more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	IBA Inferred from Biological aspect of Ancestor more info
part_of small-subunit processome	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: nucleolar protein 58

Names: nucleolar protein 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.