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    zgc:111868 zgc:111868 [ Danio rerio (zebrafish) ]

    Gene ID: 556628, updated on 17-Sep-2024

    Summary

    Official Symbol
    zgc:111868provided by ZNC
    Official Full Name
    zgc:111868provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050809-138
    See related
    Ensembl:ENSDARG00000099060 AllianceGenome:ZFIN:ZDB-GENE-050809-138
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd14f12; wu:fd14f12; si:ch73-207h17.1
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See zgc:111868 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (42364157..42368289, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (42208872..42212999, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496840 Neighboring gene transcription elongation regulator 1 like Neighboring gene uncharacterized LOC137496841 Neighboring gene si:ch211-221j21.3 Neighboring gene glutaredoxin 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC111868

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC556628

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423535.1NP_001410464.1  uncharacterized protein LOC556628 precursor

      Status: VALIDATED

      Source sequence(s)
      CU607079
      UniProtKB/TrEMBL
      A0A0R4ID77, A0A8M2B2I6
      Related
      ENSDARP00000131087.1, ENSDART00000171075.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      42364157..42368289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001034970.1: Suppressed sequence

      Description
      NM_001034970.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.