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    sid1 secreted immunoglobulin domain 1 [ Danio rerio (zebrafish) ]

    Gene ID: 246712, updated on 2-Nov-2024

    Summary

    Official Symbol
    sid1provided by ZNC
    Official Full Name
    secreted immunoglobulin domain 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-020620-1
    See related
    Ensembl:ENSDARG00000095540 AllianceGenome:ZFIN:ZDB-GENE-020620-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fe25h07; wu:fe25h07
    Summary
    Predicted to be involved in response to bacterium. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See sid1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (13616099..13618344, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (13558440..13560685, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene arrestin domain containing 2 Neighboring gene si:ch211-1a19.2 Neighboring gene si:ch211-1a19.3 Neighboring gene WD repeat domain 18

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    secreted immunoglobulin domain 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127332.1NP_001120804.1  secreted immunoglobulin domain 1 precursor

      See identical proteins and their annotated locations for NP_001120804.1

      Status: PROVISIONAL

      Source sequence(s)
      AY127570
      Related
      ENSDARP00000115207.1, ENSDART00000137289.2
      Conserved Domains (2) summary
      cd00099
      Location:30122
      IgV; Immunoglobulin variable domain (IgV)
      smart00410
      Location:29118
      IG_like; Immunoglobulin like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      13616099..13618344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)