U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    aamp angio-associated, migratory cell protein [ Danio rerio (zebrafish) ]

    Gene ID: 405874, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    aampprovided by ZNC
    Official Full Name
    angio-associated, migratory cell proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2370
    See related
    Ensembl:ENSDARG00000045019 AllianceGenome:ZFIN:ZDB-GENE-040426-2370
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:85939; zgc:92640
    Summary
    Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human AAMP (angio associated migratory cell protein). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See aamp in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (59914126..59922087)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (59981530..59990102)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene lysine (K)-specific demethylase 6A, like Neighboring gene uncharacterized LOC101883235 Neighboring gene G-protein coupled bile acid receptor 1-like Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene F-box and leucine-rich repeat protein 3b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The inflammatory bowel disease (IBD) susceptibility genes NOD1 and NOD2 have conserved anti-bacterial roles in zebrafish. Oehlers SH, et al. Dis Model Mech, 2011 Nov. PMID 21729873, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC85939

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    angio-associated migratory cell protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212938.1 → NP_998103.1  angio-associated migratory cell protein

      See identical proteins and their annotated locations for NP_998103.1

      Status: PROVISIONAL

      Source sequence(s)
      BC067708
      UniProtKB/TrEMBL
      Q6NW65
      Related
      ENSDARP00000076761.4, ENSDART00000082325.6
      Conserved Domains (3) summary
      COG2319
      Location:79 → 416
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:77 → 372
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:85 → 123
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      59914126..59922087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.