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    sec23ip SEC23 interacting protein [ Danio rerio (zebrafish) ]

    Gene ID: 560750, updated on 2-Nov-2024

    Summary

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    Official Symbol
    sec23ipprovided by ZNC
    Official Full Name
    SEC23 interacting proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5259
    See related
    Ensembl:ENSDARG00000061413 AllianceGenome:ZFIN:ZDB-GENE-030131-5259
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa20e07; wu:fa20e07; zgc:152883; si:dkey-192p21.3
    Summary
    Predicted to enable metal ion binding activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human SEC23IP (SEC23 interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See sec23ip in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (25549424..25566308)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (25418974..25435858)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene BCL2 associated athanogene 3 Neighboring gene inositol polyphosphate-5-phosphatase F Neighboring gene minichromosome maintenance complex binding protein Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 2 Neighboring gene ret proto-oncogene receptor tyrosine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes. Wang S, et al. Mar Biotechnol (NY), 2007 Nov-Dec. PMID 17671813
    2. Identification and Expression Analysis of the Complete Family of Zebrafish pkd Genes. England SJ, et al. Front Cell Dev Biol, 2017. PMID 28271061, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC152883

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in COPII-coated ER to Golgi transport vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SEC23-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077379.1 → NP_001070847.1  SEC23-interacting protein

      See identical proteins and their annotated locations for NP_001070847.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124597
      UniProtKB/TrEMBL
      Q08BR7
      Related
      ENSDARP00000081987.4, ENSDART00000087553.5
      Conserved Domains (4) summary
      smart00454
      Location:630 → 683
      SAM; Sterile alpha motif
      pfam02862
      Location:758 → 965
      DDHD; DDHD domain
      cl02729
      Location:251 → 323
      WWE; WWE domain
      cl15755
      Location:628 → 688
      SAM_superfamily; SAM (Sterile alpha motif )

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      25549424..25566308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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