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    birc6-as2 birc6 antisense RNA 2 [ Danio rerio (zebrafish) ]

    Gene ID: 101885944, updated on 2-Nov-2024

    Summary

    Official Symbol
    birc6-as2provided by ZNC
    Official Full Name
    birc6 antisense RNA 2provided by ZNC
    Primary source
    ZFIN:ZDB-LNCRNAG-131127-227
    See related
    Ensembl:ENSDARG00000097706 AllianceGenome:ZFIN:ZDB-LNCRNAG-131127-227
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    megamind; linc-birc6; si:dkey-11a7.3
    Summary
    Acts upstream of or within brain development. Is expressed in brain and eye. Orthologous to human BIRC6-AS2 (BIRC6 antisense RNA 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See birc6-as2 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (22687172..22689787, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (22667336..22669951, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene exonuclease 1 Neighboring gene Yip1 domain family, member 4 Neighboring gene baculoviral IAP repeat containing 6 Neighboring gene tetratricopeptide repeat domain 27 Neighboring gene microRNA 456 Neighboring gene latent transforming growth factor beta binding protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125794.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JQ681268
      Related
      ENSDART00000154316.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      22687172..22689787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394987.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      70510..73127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)