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    nap1l1 nucleosome assembly protein 1-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 368260, updated on 27-Mar-2024

    Summary

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    Official Symbol
    nap1l1provided by ZNC
    Official Full Name
    nucleosome assembly protein 1-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030516-2
    See related
    Ensembl:ENSDARG00000101813 AllianceGenome:ZFIN:ZDB-GENE-030516-2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb716; sb:cb13; wu:fb83g07
    Summary
    Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within response to yeast. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including NAP1L1 (nucleosome assembly protein 1 like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See nap1l1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (2352783..2380332, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (1469461..1496886, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene cAMP-regulated D2 protein-like Neighboring gene pleckstrin homology-like domain, family A, member 1 Neighboring gene oxysterol binding protein-like 8 Neighboring gene zinc finger DHHC-type palmitoyltransferase 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Abundant expression of nucleosome assembly protein 1 (NAP1) gene in goldfish scale with lateral line. Li L, et al. J Toxicol Sci, 2007 Oct. PMID 17965550
    2. Characterization of a nap1l1 transgenic reporter in zebrafish. Sun S, et al. Gene, 2020 Apr 20. PMID 31987905
    3. Expression of nucleosome assembly protein 1 like genes in zebrafish embryos. Sun S, et al. Gene Expr Patterns, 2020 Jan. PMID 31669493
    4. Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study. Wang YC, et al. BMC Syst Biol, 2013 Aug 16. PMID 23947337, Free PMC Article
    5. LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans. Tan S, et al. Genome Res, 2016 Dec. PMID 27934698, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to yeast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nucleosome assembly protein 1-like 1
    Names
    nap1l1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201318.1 → NP_958475.1  nucleosome assembly protein 1-like 1

      See identical proteins and their annotated locations for NP_958475.1

      Status: PROVISIONAL

      Source sequence(s)
      BC044152
      UniProtKB/TrEMBL
      A0A286Y948, A0A8N7XJ26, B2GTB4, Q803X7
      Related
      ENSDARP00000143696.2, ENSDART00000177727.2
      Conserved Domains (1) summary
      pfam00956
      Location:64 → 335
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      2352783..2380332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171667.3 → XP_005171724.1  nucleosome assembly protein 1-like 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BJ06
      Conserved Domains (1) summary
      pfam00956
      Location:75 → 342
      NAP; Nucleosome assembly protein (NAP)

    2. XM_005171666.3 → XP_005171723.1  nucleosome assembly protein 1-like 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BJ13
      Conserved Domains (1) summary
      pfam00956
      Location:75 → 346
      NAP; Nucleosome assembly protein (NAP)

    3. XM_021474937.1 → XP_021330612.1  nucleosome assembly protein 1-like 1 isoform X3

      UniProtKB/TrEMBL
      A0A8M9PH16
      Conserved Domains (1) summary
      pfam00956
      Location:75 → 346
      NAP; Nucleosome assembly protein (NAP)
    Nucleotide Protein Strain
    Heading Accession and Version

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