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    eef1a1l3 eukaryotic translation elongation factor 1 alpha 1, like 3 [ Danio rerio (zebrafish) ]

    Gene ID: 407641, updated on 27-Mar-2024

    Summary

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    Official Symbol
    eef1a1l3provided by ZNC
    Official Full Name
    eukaryotic translation elongation factor 1 alpha 1, like 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5667
    See related
    Ensembl:ENSDARG00000071727 AllianceGenome:ZFIN:ZDB-GENE-030131-5667
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi12b10; wu:fi12b10; si:dkey-37o8.1
    Summary
    Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See eef1a1l3 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (10898671..10901351)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (10758304..10760984)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene si:ch211-69l10.2 Neighboring gene family with sequence similarity 49 member Bb Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b Neighboring gene microRNA mir-7147 Neighboring gene GTPase IMAP family member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A proteomics approach identifies novel resident zebrafish Balbiani body proteins Cirbpa and Cirbpb. Jamieson-Lucy AH, et al. Dev Biol, 2022 Apr. PMID 35065906, Free PMC Article
    2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables translation elongation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational elongation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Elongation factor 1-alpha-like
    Names
    eukaryotic translation elongation factor 1 alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163994.1 → NP_001157466.1  Elongation factor 1-alpha-like

      Status: VALIDATED

      Source sequence(s)
      BC049512, DY570803, EH556069, EH569396
      UniProtKB/TrEMBL
      A0A8M1NS15, Q7ZWA1
      Related
      ENSDARP00000097050.3, ENSDART00000106272.4
      Conserved Domains (4) summary
      PTZ00141
      Location:1 → 458
      PTZ00141; elongation factor 1- alpha; Provisional
      cd01883
      Location:9 → 239
      EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
      cd03693
      Location:244 → 332
      EF1_alpha_II; Domain II of elongation factor 1-alpha
      cd03705
      Location:337 → 438
      EF1_alpha_III; Domain III of Elongation Factor 1

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      10898671..10901351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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