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    actr1b actin related protein 1B [ Danio rerio (zebrafish) ]

    Gene ID: 406681, updated on 18-Sep-2024

    Summary

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    Official Symbol
    actr1bprovided by ZNC
    Official Full Name
    actin related protein 1Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2695
    See related
    Ensembl:ENSDARG00000011611 AllianceGenome:ZFIN:ZDB-GENE-040426-2695
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    actr1; zehn1110; zgc:56317; wu:fc22g09; wu:fc56d01; wu:fy52e08; hm:zehn1110
    Summary
    Orthologous to several human genes including ACTR1B (actin related protein 1B). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See actr1b in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (42521970..42540839)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (42693590..42712459)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene neuropeptide Y receptor Y8a Neighboring gene membrane-associated ring finger (C3HC4) 5, like Neighboring gene potassium channel tetramerization domain containing 9b Neighboring gene fibroblast growth factor receptor 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Downregulation of GSTK1 Is a Common Mechanism Underlying Hypertrophic Cardiomyopathy. Sasagawa S, et al. Front Pharmacol, 2016. PMID 27378925, Free PMC Article
    2. Dynactin1 depletion leads to neuromuscular synapse instability and functional abnormalities. Bercier V, et al. Mol Neurodegener, 2019 Jul 10. PMID 31291987, Free PMC Article
    3. Identification, characterization, and mapping of expressed sequence tags from an embryonic zebrafish heart cDNA library. Ton C, et al. Genome Res, 2000 Dec. PMID 11116087, Free PMC Article
    4. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC113996

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    part_of dynactin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    actin related protein 1B
    Names
    ARP1 actin related protein 1, centractin
    ARP1 actin-related protein 1 homolog B
    actin related protein 1, centractin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213372.1 → NP_998537.1  actin related protein 1B

      See identical proteins and their annotated locations for NP_998537.1

      Status: PROVISIONAL

      Source sequence(s)
      BC046069
      UniProtKB/TrEMBL
      A0A8N1TQK8, Q7ZUZ2
      Related
      ENSDARP00000015781.7, ENSDART00000010420.9
      Conserved Domains (1) summary
      cl17037
      Location:5 → 376
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      42521970..42540839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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