ftr67 finTRIM family, member 67 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ftr67provided by ZNC
Official Full Name: finTRIM family, member 67provided by ZNC
Primary source: ZFIN:ZDB-GENE-060312-27
See related: Ensembl:ENSDARG00000098820 AllianceGenome:ZFIN:ZDB-GENE-060312-27
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fb13h06; zgc:136688
Summary: Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm. Is expressed in brain; gill; liver; muscle; and pleuroperitoneal region. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 2

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (51065777..51087092, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (51331557..51352872, complement)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

FTR67, a member of the fish-specific finTRIM family, triggers IFN pathway and against spring viremia of carp virus.
Title: FTR67, a member of the fish-specific finTRIM family, triggers IFN pathway and against spring viremia of carp virus.

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: finTRIM family, member 67

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001039719.2 → NP_001034808.2 finTRIM family, member 67

Status: VALIDATED

Source sequence(s)

BX255896

UniProtKB/TrEMBL

A0A0R4IJ94, A0A8M1N8D6

Related

ENSDARP00000133898.1, ENSDART00000167987.2

Conserved Domains (3) summary

smart00336
Location:150 → 189

BBOX; B-Box-type zinc finger

cl17238
Location:15 → 57

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl24005
Location:218 → 294

DUF2570; Protein of unknown function (DUF2570)