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    si:zfos-905g2.1 si:zfos-905g2.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100003955, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:zfos-905g2.1provided by ZNC
    Official Full Name
    si:zfos-905g2.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9565
    See related
    Ensembl:ENSDARG00000093496 AllianceGenome:ZFIN:ZDB-GENE-030131-9565
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj87c06; wu:fj87c06
    Summary
    Orthologous to human BEND2 (BEN domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:zfos-905g2.1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (1033669..1042818)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (1024508..1033698)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene cadherin 26, tandem duplicate 2 Neighboring gene cadherin 26, tandem duplicate 1 Neighboring gene zgc:113423 Neighboring gene protein FAM13A-like Neighboring gene solute carrier family 34 member 2b Neighboring gene uncharacterized LOC137489066

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Regulation of cytochrome P450 expression in a novel liver cell line from zebrafish (Brachydanio rerio). Miranda CL, et al. Arch Biochem Biophys, 1993 Sep. PMID 8373170
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:zfos-905g2.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      1033669..1042818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001338211.9 → XP_001338247.4  uncharacterized protein si:zfos-905g2.1

      UniProtKB/TrEMBL
      A0A8M1Q7C1, E9QHL3
      Related
      ENSDARP00000115078.1, ENSDART00000143391.3
      Conserved Domains (1) summary
      smart01025
      Location:409 → 475
      BEN; The BEN domain is found in diverse animal proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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