U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    UBE2V1 ubiquitin conjugating enzyme E2 V1 [ Homo sapiens (human) ]

    Gene ID: 7335, updated on 2-Nov-2024

    Summary

    Official Symbol
    UBE2V1provided by HGNC
    Official Full Name
    ubiquitin conjugating enzyme E2 V1provided by HGNC
    Primary source
    HGNC:HGNC:12494
    See related
    Ensembl:ENSG00000244687 MIM:602995; AllianceGenome:HGNC:12494
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CIR1; UEV1; CROC1; UBE2V; UEV-1; UEV1A; CROC-1
    Summary
    Ubiquitin-conjugating E2 enzyme variant proteins constitute a distinct subfamily within the E2 protein family. They have sequence similarity to other ubiquitin-conjugating enzymes but lack the conserved cysteine residue that is critical for the catalytic activity of E2s. The protein encoded by this gene is located in the nucleus and can cause transcriptional activation of the human FOS proto-oncogene. It is thought to be involved in the control of differentiation by altering cell cycle behavior. Alternatively spliced transcript variants encoding multiple isoforms have been described for this gene, and multiple pseudogenes of this gene have been identified. Co-transcription of this gene and the neighboring upstream gene generates a rare transcript (Kua-UEV), which encodes a fusion protein comprised of sequence sharing identity with each individual gene product. [provided by RefSeq, Apr 2012]
    Expression
    Ubiquitous expression in brain (RPKM 23.0), placenta (RPKM 20.8) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See UBE2V1 in Genome Data Viewer
    Location:
    20q13.13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (50081124..50115957, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (51850763..51885744, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (48697661..48732494, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18081 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48660109-48661056 Neighboring gene translation regulatory long non-coding RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48666284-48667078 Neighboring gene uncharacterized LOC105372655 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48671143-48671728 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18082 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:48681498-48681675 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13012 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48689593-48690102 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48690103-48690612 Neighboring gene PEDS1-UBE2V1 readthrough Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:48715799-48716462 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18083 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:48730039-48730606 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:48732458-48732614 Neighboring gene plasmanylethanolamine desaturase 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48754882-48755569 Neighboring gene putative uncharacterized protein CCDC28A-AS1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48760275-48760910 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13014 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:48782079-48783278 Neighboring gene long intergenic non-protein coding RNA 1275

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Tat tat HIV-1 Tat 47-59 peptide downregulates gene expression of ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1) in U-937 macrophages PubMed
    capsid gag Heterodimeric E2 UBC13-UEV1A and the arginine 63-linked ubiquitin chains play a role in TRIM5alpha-mediated signaling, which leads to capsid-specific restriction PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of UBC13-MMS2 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of UBC13-MMS2 complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in extracellular exosome HDA PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus TAS
    Traceable Author Statement
    more info
    PubMed 
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of ubiquitin conjugating enzyme complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of ubiquitin conjugating enzyme complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of ubiquitin ligase complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    ubiquitin-conjugating enzyme E2 variant 1
    Names
    DNA-binding protein
    TRAF6-regulated IKK activator 1 beta Uev1A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029526.2 RefSeqGene

      Range
      7808..39834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001032288.3NP_001027459.1  ubiquitin-conjugating enzyme E2 variant 1 isoform d

      See identical proteins and their annotated locations for NP_001027459.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (d) is shorter and has a distinct N-terminus, compared to isoform a.
      Source sequence(s)
      BC000468, BU934624, BX647511
      Consensus CDS
      CCDS33483.1
      UniProtKB/Swiss-Prot
      E1P629, Q13403, Q13404, Q13532, Q5TGE0, Q5TGE3, Q96H34, Q9GZT0, Q9GZW1, Q9H4J3, Q9H4J4, Q9UKL1, Q9UM48, Q9UM49, Q9UM50
      Related
      ENSP00000360739.4, ENST00000371674.8
      Conserved Domains (1) summary
      smart00212
      Location:16142
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    2. NM_001257393.2NP_001244322.1  ubiquitin-conjugating enzyme E2 variant 1 isoform a

      See identical proteins and their annotated locations for NP_001244322.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 5 encode the same isoform (a)
      Source sequence(s)
      BX647511, CN346855, DA409547
      Consensus CDS
      CCDS13426.1
      UniProtKB/Swiss-Prot
      Q13404
      Conserved Domains (1) summary
      smart00212
      Location:39165
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    3. NM_001257394.2NP_001244323.1  ubiquitin-conjugating enzyme E2 variant 1 isoform c

      See identical proteins and their annotated locations for NP_001244323.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) lacks an exon in the coding region and initiates translation at an alternate start codon, compared to variant 1. Variants 3 and 6 encode the same isoform (c), which is shorter and has a distinct N-terminus, compared to isoform a.
      Source sequence(s)
      BX647511, CD103154, DA409547
      Consensus CDS
      CCDS13427.1
      UniProtKB/Swiss-Prot
      Q13404
      Related
      ENSP00000407770.2, ENST00000415862.6
      Conserved Domains (1) summary
      cl00154
      Location:398
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    4. NM_001257395.2NP_001244324.1  ubiquitin-conjugating enzyme E2 variant 1 isoform e

      See identical proteins and their annotated locations for NP_001244324.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7) differs in the 5' UTR, initiates translation at an alternate start codon and uses an alternate splice site in the coding region, compared to variant 1. The encoded isoform (e) is shorter and has a distinct N-terminus, compared to isoform a.
      Source sequence(s)
      BU934624, BX647511, DA885410
      Conserved Domains (1) summary
      smart00212
      Location:13139
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    5. NM_001257396.2NP_001244325.1  ubiquitin-conjugating enzyme E2 variant 1 isoform f

      See identical proteins and their annotated locations for NP_001244325.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8) differs in the 5' UTR, initiates translation at an alternate start codon and lacks an exon in the 3' coding region, compared to variant 1. The encoded isoform (f) is shorter and has a distinct N-terminus, compared to isoform a.
      Source sequence(s)
      BU934624, BX647511, DA696213
      Consensus CDS
      CCDS58775.1
      UniProtKB/Swiss-Prot
      Q13404
      Related
      ENSP00000360720.5, ENST00000371657.9
      Conserved Domains (1) summary
      cl00154
      Location:16100
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    6. NM_001257397.2NP_001244326.1  ubiquitin-conjugating enzyme E2 variant 1 isoform g

      See identical proteins and their annotated locations for NP_001244326.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9) differs in the 5' UTR, contains an alternate internal exon and initiates translation at a downstream, in-frame start codon, compared to variant 1. Variants 9, 10, 11, 14, and 17 encode the same isoform (g), which has a shorter N-terminus compared to isoform a.
      Source sequence(s)
      BU934624, BX647511, DB448941
      Consensus CDS
      CCDS74740.1
      UniProtKB/TrEMBL
      G3V2F7
      Conserved Domains (1) summary
      smart00212
      Location:2100
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    7. NM_001257398.2NP_001244327.1  ubiquitin-conjugating enzyme E2 variant 1 isoform g

      See identical proteins and their annotated locations for NP_001244327.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10) differs in the 5' UTR, contains an alternate internal exon and initiates translation at a downstream, in-frame start codon, compared to variant 1. Variants 9, 10, 11, 14, and 17 encode the same isoform (g), which has a shorter N-terminus compared to isoform a.
      Source sequence(s)
      BU934624, BX647511, DA892136
      Consensus CDS
      CCDS74740.1
      UniProtKB/TrEMBL
      G3V2F7
      Related
      ENSP00000485599.1, ENST00000625172.3
      Conserved Domains (1) summary
      smart00212
      Location:2100
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    8. NM_001257399.2NP_001244328.1  ubiquitin-conjugating enzyme E2 variant 1 isoform g

      See identical proteins and their annotated locations for NP_001244328.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (11) differs in the 5' UTR, contains an alternate internal exon and initiates translation at a downstream, in-frame start codon, compared to variant 1. Variants 9, 10, 11, 14, and 17 encode the same isoform (g), which has a shorter N-terminus compared to isoform a.
      Source sequence(s)
      BU934624, BX647511, DA573591, DA625165
      Consensus CDS
      CCDS74740.1
      UniProtKB/TrEMBL
      G3V2F7
      Conserved Domains (1) summary
      smart00212
      Location:2100
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    9. NM_001282575.3NP_001269504.1  ubiquitin-conjugating enzyme E2 variant 1 isoform h

      See identical proteins and their annotated locations for NP_001269504.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (12) uses an alternate 5' exon structure, and thus differs in the 5' UTR and 5' coding region, compared to variant 1. These differences cause translation initiation at an alternate AUG and result in an isoform (h) with a shorter and distinct N-terminus, compared to isoform a. Variants 12, 15, and 16 encode the same isoform (h).
      Source sequence(s)
      BC005215, BX647511, KF456937
      Conserved Domains (1) summary
      cl00154
      Location:286
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    10. NM_001282576.2NP_001269505.1  ubiquitin-conjugating enzyme E2 variant 1 isoform g

      See identical proteins and their annotated locations for NP_001269505.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (14) differs in the 5' UTR, contains an alternate internal exon and initiates translation at a downstream, in-frame start codon, compared to variant 1. Variants 9, 10, 11, 14, and 17 encode the same isoform (g), which has a shorter N-terminus compared to isoform a.
      Source sequence(s)
      BU934624, BX647511, DA642098
      Consensus CDS
      CCDS74740.1
      UniProtKB/TrEMBL
      G3V2F7
      Related
      ENSP00000484828.1, ENST00000617119.4
      Conserved Domains (1) summary
      smart00212
      Location:2100
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    11. NM_001282577.3NP_001269506.1  ubiquitin-conjugating enzyme E2 variant 1 isoform h

      See identical proteins and their annotated locations for NP_001269506.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (15) uses an alternate 5' exon structure, and thus differs in the 5' UTR and 5' coding region, compared to variant 1. These differences cause translation initiation at an alternate AUG and result in an isoform (h) with a shorter and distinct N-terminus, compared to isoform a. Variants 12, 15, and 16 encode the same isoform (h).
      Source sequence(s)
      BU934624, BX647511, DA087027, KF456937
      Conserved Domains (1) summary
      cl00154
      Location:286
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    12. NM_001282578.3NP_001269507.1  ubiquitin-conjugating enzyme E2 variant 1 isoform h

      See identical proteins and their annotated locations for NP_001269507.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (16) uses an alternate 5' exon structure, and thus differs in the 5' UTR and 5' coding region, compared to variant 1. These differences cause translation initiation at an alternate AUG and result in an isoform (h) with a shorter and distinct N-terminus, compared to isoform a. Variants 12, 15, and 16 encode the same isoform (h).
      Source sequence(s)
      BU934624, BX647511, DA916492, KF456937
      Conserved Domains (1) summary
      cl00154
      Location:286
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    13. NM_001282579.2NP_001269508.1  ubiquitin-conjugating enzyme E2 variant 1 isoform g

      See identical proteins and their annotated locations for NP_001269508.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (17) differs in the 5' UTR, contains an alternate internal exon and initiates translation at a downstream, in-frame start codon, compared to variant 1. Variants 9, 10, 11, 14, and 17 encode the same isoform (g), which has a shorter N-terminus compared to isoform a.
      Source sequence(s)
      BU934624, BX647511, HY019085
      Consensus CDS
      CCDS74740.1
      UniProtKB/TrEMBL
      G3V2F7
      Related
      ENSP00000450635.2, ENST00000557021.5
      Conserved Domains (1) summary
      smart00212
      Location:2100
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    14. NM_001282580.2NP_001269509.1  ubiquitin-conjugating enzyme E2 variant 1 isoform i

      See identical proteins and their annotated locations for NP_001269509.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (18) has multiple differences in the coding region, compared to variant 1. The resulting protein (isoform i) has a distinct N- and C-termini and is shorter than isoform 1.
      Source sequence(s)
      AI688615, AL034423, BF446402, BF690501, BU934624, CF127653
      Conserved Domains (1) summary
      cl00154
      Location:1656
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    15. NM_021988.6NP_068823.2  ubiquitin-conjugating enzyme E2 variant 1 isoform a

      See identical proteins and their annotated locations for NP_068823.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a). Variants 1, 2 and 5 encode the same isoform.
      Source sequence(s)
      AK314754, BX647511, DA409547
      Consensus CDS
      CCDS13426.1
      UniProtKB/Swiss-Prot
      Q13404
      Related
      ENSP00000340305.3, ENST00000340309.7
      Conserved Domains (1) summary
      smart00212
      Location:39165
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    16. NM_022442.6NP_071887.1  ubiquitin-conjugating enzyme E2 variant 1 isoform c

      See identical proteins and their annotated locations for NP_071887.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, initiates translation at an alternate start codon and lacks an exon in the coding region, compared to variant 1. Variants 3 and 6 encode the same isoform (c), which is shorter and has a distinct N-terminus, compared to isoform a.
      Source sequence(s)
      AL034423
      Consensus CDS
      CCDS13427.1
      UniProtKB/Swiss-Prot
      Q13404
      Conserved Domains (1) summary
      cl00154
      Location:398
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    17. NM_199144.3NP_954595.1  ubiquitin-conjugating enzyme E2 variant 1 isoform a

      See identical proteins and their annotated locations for NP_954595.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 5 encode the same isoform (a).
      Source sequence(s)
      BU540046, BX647511
      Consensus CDS
      CCDS13426.1
      UniProtKB/Swiss-Prot
      Q13404
      Related
      ENSP00000360742.3, ENST00000371677.7
      Conserved Domains (1) summary
      smart00212
      Location:39165
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues

    RNA

    1. NR_047554.2 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (13) uses an alternate 5'-most exon and lacks an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 4.
      Source sequence(s)
      BU934624, BX647511
      Related
      ENST00000396059.7
    2. NR_104218.2 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (19) uses an alternate 5' and 3' exon structure, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AI688615, AL034423, BF446402, BF690501, BU934624, BX375182

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      50081124..50115957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      51850763..51885744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)