U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    tbc1d10aa TBC1 domain family, member 10Aa [ Danio rerio (zebrafish) ]

    Gene ID: 325772, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    tbc1d10aaprovided by ZNC
    Official Full Name
    TBC1 domain family, member 10Aaprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4497
    See related
    Ensembl:ENSDARG00000102070 AllianceGenome:ZFIN:ZDB-GENE-030131-4497
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd11a11; wu:fd11a11; si:ch211-87l2.1
    Summary
    Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D10A (TBC1 domain family member 10A). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tbc1d10aa in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (40426764..40452044, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (40387181..40412467, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene ORAI calcium release-activated calcium modulator 1a Neighboring gene apelin receptor a Neighboring gene myosin, light chain 7, regulatory Neighboring gene glucokinase (hexokinase 4)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Embryonic expression patterns of TBC1D10 subfamily genes in zebrafish. Sun S, et al. Gene Expr Patterns, 2022 Mar. PMID 34843939
    2. Characterization of the Apelin/Elabela Receptors (APLNR) in Chickens, Turtles, and Zebrafish: Identification of a Novel Apelin-Specific Receptor in Teleosts. Zhang J, et al. Front Endocrinol (Lausanne), 2018. PMID 30631305, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in activation of GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    TBC1 domain family member 10A; TBC1 domain family, member 10Aa

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      40426764..40452044 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304172.2 → XP_009302447.1  TBC1 domain family member 10A

      UniProtKB/TrEMBL
      A0A8M3BBZ7
      Related
      ENSDARP00000131583.1, ENSDART00000157698.2
      Conserved Domains (1) summary
      pfam00566
      Location:142 → 305
      RabGAP-TBC; Rab-GTPase-TBC domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools