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    si:ch73-6k14.2 si:ch73-6k14.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100150046, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch73-6k14.2provided by ZNC
    Official Full Name
    si:ch73-6k14.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110914-243
    See related
    Ensembl:ENSDARG00000096031 AllianceGenome:ZFIN:ZDB-GENE-110914-243
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in regulation of autophagy. Predicted to be active in mitochondrion. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:ch73-6k14.2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (49245794..49250513, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (48599898..48606100, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886909 Neighboring gene chemokine (C-X-C motif) ligand 18b Neighboring gene calcyon neuron-specific vesicular protein Neighboring gene muscle segment homeobox 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein si:ch73-6k14.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      49245794..49250513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477215.1 → XP_021332890.1  uncharacterized protein si:ch73-6k14.2

      UniProtKB/TrEMBL
      A0A8M9QG94, H0WFA6
      Related
      ENSDARP00000125538.1, ENSDART00000150386.2
      Conserved Domains (1) summary
      pfam15343
      Location:18 → 107
      DEPP; Decidual protein induced by progesterone family
    Nucleotide Protein Strain
    Heading Accession and Version

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