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    zgc:66433 zgc:66433 [ Danio rerio (zebrafish) ]

    Gene ID: 321250, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:66433provided by ZNC
    Official Full Name
    zgc:66433provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9832
    See related
    Ensembl:ENSDARG00000071697 AllianceGenome:ZFIN:ZDB-GENE-030131-9832
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb421; sb:cb421; hm:zeh0009; wu:fj98c11
    Summary
    Is expressed in several structures, including head mesenchyme; margin; mesoderm; neural keel; and tail bud. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:66433 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (20918653..21000614)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (20632619..20703340)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene zgc:162941 Neighboring gene lysozyme g-like 2 Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 195 Neighboring gene uncharacterized LOC103908746

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Zebrafish Chromosome 14 Gene Differential Expression in the fmr1 (h u2787) Model of Fragile X Syndrome. Barthelson K, et al. Front Genet, 2021. PMID 34135935, Free PMC Article
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC321250

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423521.1 → NP_001410450.1  uncharacterized protein LOC321250 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CR774199
      UniProtKB/TrEMBL
      Q6PCR1
      Related
      ENSDARP00000096976.3, ENSDART00000106198.5

    2. NM_199273.2 → NP_954967.2  uncharacterized protein LOC321250 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR774199
      UniProtKB/TrEMBL
      Q6PCR1
      Related
      ENSDARP00000096990.4, ENSDART00000106212.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      20918653..21000614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213156.1 → XP_068069257.1  uncharacterized protein LOC321250 isoform X1

      Related
      ENSDARP00000155944.1, ENSDART00000182539.1

    2. XM_068213158.1 → XP_068069259.1  uncharacterized protein LOC321250 isoform X3

    3. XM_068213157.1 → XP_068069258.1  uncharacterized protein LOC321250 isoform X2

      Related
      ENSDARP00000135238.1, ENSDART00000166366.2
    Nucleotide Protein Strain
    Heading Accession and Version

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