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    ykt6 YKT6 v-SNARE homolog (S. cerevisiae) [ Danio rerio (zebrafish) ]

    Gene ID: 394067, updated on 26-Jun-2024

    Summary

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    Official Symbol
    ykt6provided by ZNC
    Official Full Name
    YKT6 v-SNARE homolog (S. cerevisiae)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-733
    See related
    Ensembl:ENSDARG00000038308 AllianceGenome:ZFIN:ZDB-GENE-040426-733
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:55536
    Summary
    Predicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane; cytoplasmic vesicle membrane; and cytosol. Predicted to be integral component of membrane. Orthologous to human YKT6 (YKT6 v-SNARE homolog). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See ykt6 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (2841268..2850936)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (2814097..2823765)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene posterior neuron-specific homeobox Neighboring gene AE binding protein 1a Neighboring gene DEAD (Asp-Glu-Ala-Asp) box helicase 56 Neighboring gene cell cycle and apoptosis regulator 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC55536

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables 2,6-dimethyl-5-methylene-3-oxo-heptanoyl-CoA C-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 2-ketobutyrate formate-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 2-methylhexanoyl-CoA C-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    synaptobrevin homolog YKT6
    NP_957386.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201092.1 → NP_957386.1  synaptobrevin homolog YKT6

      See identical proteins and their annotated locations for NP_957386.1

      Status: PROVISIONAL

      Source sequence(s)
      BC048049
      UniProtKB/Swiss-Prot
      Q7ZUN8
      UniProtKB/TrEMBL
      B2GTI5
      Related
      ENSDARP00000055868.3, ENSDART00000055869.4
      Conserved Domains (3) summary
      COG5143
      Location:3 → 198
      SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
      cd15867
      Location:136 → 195
      R-SNARE_YKT6; SNARE motif of YKT6
      pfam13774
      Location:44 → 104
      Longin; Regulated-SNARE-like domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      2841268..2850936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7ZUN8.1 GenPept UniProtKB/Swiss-Prot:Q7ZUN8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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