zgc:163079 zgc:163079 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:163079provided by ZNC
Official Full Name: zgc:163079provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7428
See related: Ensembl:ENSDARG00000056773 AllianceGenome:ZFIN:ZDB-GENE-030131-7428
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj17a06; wu:fb09a09; wu:fb14e12; wu:fj17a06
Summary: Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (19557602..19561058, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (19407862..19411318, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

AI397260 (e-PCR)
- UniSTS:206662

fb14e12.x1 (e-PCR)
- UniSTS:190141

fb14e12.x1 (e-PCR)
- UniSTS:190142

fj17a06.x1 (e-PCR)
- UniSTS:198649

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables serine-type endopeptidase activity	IBA Inferred from Biological aspect of Ancestor more info
enables serine-type endopeptidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in proteolysis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within proteolysis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC100006550

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001083582.2 → NP_001077051.2 uncharacterized protein LOC100006550 precursor

Status: VALIDATED

Source sequence(s)

BC152527, CO808422, EH468020

UniProtKB/TrEMBL

A0A8M1NCM6, A3KP90, F1QS72

Related

ENSDARP00000073779.4, ENSDART00000079323.5

Conserved Domains (2) summary

smart00020
Location:35 → 266

Tryp_SPc; Trypsin-like serine protease

cd00190
Location:36 → 267

Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...