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    cd82b CD82 molecule b [ Danio rerio (zebrafish) ]

    Gene ID: 324137, updated on 12-Sep-2024

    Summary

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    Official Symbol
    cd82bprovided by ZNC
    Official Full Name
    CD82 molecule bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2857
    See related
    Ensembl:ENSDARG00000026070 AllianceGenome:ZFIN:ZDB-GENE-030131-2857
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cd82; kai1; wu:fc19g11
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CD82 (CD82 molecule). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See cd82b in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (27571466..27626391)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (27593226..27648151)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488288 Neighboring gene tumor protein p53 inducible protein 11b Neighboring gene tetraspanin 18b Neighboring gene IQ motif containing G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Regulation of zebrafish hatching by tetraspanin cd63. Trikić MZ, et al. PLoS One, 2011. PMID 21625559, Free PMC Article
    2. FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation. Fischer P, et al. BMC Biol, 2019 Jul 30. PMID 31362746, Free PMC Article
    3. RESA identifies mRNA-regulatory sequences at high resolution. Yartseva V, et al. Nat Methods, 2017 Feb. PMID 28024160, Free PMC Article
    4. Germline-specific dgcr8 knockout in zebrafish using a BACK approach. Liu Y, et al. Cell Mol Life Sci, 2017 Jul. PMID 28224202, Free PMC Article
    5. Maternal Ybx1 safeguards zebrafish oocyte maturation and maternal-to-zygotic transition by repressing global translation. Sun J, et al. Development, 2018 Oct 2. PMID 30135188

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CD82 molecule b
    Names
    CD82 antigen, b
    kangai 1 (suppression of tumorigenicity 6, prostate)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212663.1 → NP_997828.1  CD82 molecule b

      See identical proteins and their annotated locations for NP_997828.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054586
      UniProtKB/TrEMBL
      B2GPR7, F6PBA5, Q7T2E0
      Related
      ENSDARP00000116394.1, ENSDART00000147886.2
      Conserved Domains (2) summary
      cd03160
      Location:106 → 218
      CD37_CD82_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:24 → 245
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      27571466..27626391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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