si:ch73-111k22.3 si:ch73-111k22.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch73-111k22.3provided by ZNC
Official Full Name: si:ch73-111k22.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-141212-371
See related: Ensembl:ENSDARG00000103492 AllianceGenome:ZFIN:ZDB-GENE-141212-371
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be involved in endosome organization; receptor recycling; and retrograde transport, endosome to Golgi. Predicted to be active in early endosome; recycling endosome; and trans-Golgi network. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

See si:ch73-111k22.3 in Genome Data Viewer

Location:: chromosome: 20

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (3913417..3915770, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (4116131..4118483)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in endosome organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in receptor recycling	IBA Inferred from Biological aspect of Ancestor more info
involved_in retrograde transport, endosome to Golgi	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in early endosome	IBA Inferred from Biological aspect of Ancestor more info
is_active_in recycling endosome	IBA Inferred from Biological aspect of Ancestor more info
is_active_in trans-Golgi network	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: pleckstrin homology-like domain-containing protein

Names: differentially expressed in FDCP 6 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386283.1 → NP_001373212.1 pleckstrin homology-like domain-containing protein

Status: VALIDATED

Source sequence(s)

CU929133

UniProtKB/TrEMBL

A0A8M1PV46

Related

ENSDARP00000135737.1, ENSDART00000159322.2

Conserved Domains (1) summary

cl17171
Location:21 → 105

PH-like; Pleckstrin homology-like domain